#------------------------------------------------------------------------------
#$Date: 2016-02-20 02:53:41 +0200 (Sat, 20 Feb 2016) $
#$Revision: 176768 $
#$URL: svn://www.crystallography.net/cod/cif/2/10/54/2105466.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2105466
loop_
_publ_author_name
'Reibenspies, Joseph'
'Bhuvanesh, Nattamai'
_publ_section_title
;
 Absolute structure of R-({-})-2-methylpiperazine and
 S-(+)-2-methylpiperazine
;
_journal_coeditor_code           RY5050
_journal_issue                   3
_journal_name_full               'Acta Crystallographica Section B'
_journal_page_first              288
_journal_page_last               293
_journal_paper_doi               10.1107/S2052519213008713
_journal_volume                  69
_journal_year                    2013
_chemical_formula_sum            'C5 H12 N2'
_chemical_formula_weight         100.17
_chemical_melting_point          363
_chemical_name_systematic
;
S-(+)-2-methylpiperazine
;
_space_group_crystal_system      monoclinic
_space_group_IT_number           4
_space_group_name_Hall           'P 2yb'
_space_group_name_H-M_alt        'P 1 21 1'
_symmetry_space_group_name_Hall  'P 2yb'
_symmetry_space_group_name_H-M   'P 1 21 1'
_atom_sites_solution_hydrogens   mixed
_audit_creation_method           SHELXL-2012
_cell_angle_alpha                90
_cell_angle_beta                 105.254(5)
_cell_angle_gamma                90
_cell_formula_units_Z            2
_cell_length_a                   5.2090(4)
_cell_length_b                   8.4798(6)
_cell_length_c                   7.2037(5)
_cell_measurement_reflns_used    3197
_cell_measurement_temperature    110(2)
_cell_measurement_theta_max      63.64
_cell_measurement_theta_min      6.37
_cell_volume                     306.99(4)
_computing_cell_refinement       'FRAMBO (Bruker, 2002)'
_computing_data_collection       'FRAMBO (Bruker, 2002)'
_computing_data_reduction        'SAINT (Bruker, 2012b)'
_computing_molecular_graphics    'OLEX-2 (Dolomanov, 2009)'
_computing_publication_material  'Ciftab (Sheldrick, 2008)'
_computing_structure_refinement  'SHELXL-2012 (Sheldrick, 2012)'
_computing_structure_solution    'SHELXS (Sheldrick 2008)'
_diffrn_ambient_temperature      110(2)
_diffrn_measured_fraction_theta_full 0.894
_diffrn_measured_fraction_theta_max 0.983
_diffrn_measurement_device       'three-circle diffractometer'
_diffrn_measurement_device_type  'MWPC area detector'
_diffrn_measurement_method       'phi and omega scans'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54178
_diffrn_reflns_av_R_equivalents  0.0369
_diffrn_reflns_limit_h_max       5
_diffrn_reflns_limit_h_min       -5
_diffrn_reflns_limit_k_max       8
_diffrn_reflns_limit_k_min       -9
_diffrn_reflns_limit_l_max       8
_diffrn_reflns_limit_l_min       -8
_diffrn_reflns_number            6541
_diffrn_reflns_theta_full        67.679
_diffrn_reflns_theta_max         63.740
_diffrn_reflns_theta_min         8.246
_exptl_absorpt_coefficient_mu    0.523
_exptl_absorpt_correction_T_max  0.7524
_exptl_absorpt_correction_T_min  0.6485
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
SADABS-2009/1 (Bruker,2009) was employed for absorption correction.
wR2(int) was   0.0000 before and   0.0000 after correction.
The ratio of minimum to maximum transmission factors was  -1.#IND.
Additional spherical absorption correction applied with mu*r =  0.0000.
The λ/2 correction was not applied
;
_exptl_crystal_colour            'colorless '
_exptl_crystal_density_diffrn    1.084
_exptl_crystal_description       'plate     '
_exptl_crystal_F_000             112
_exptl_crystal_size_max          0.120
_exptl_crystal_size_mid          0.110
_exptl_crystal_size_min          0.040
_refine_diff_density_max         0.176
_refine_diff_density_min         -0.212
_refine_ls_abs_structure_details
;
 Hooft y determined using 430 Bijvoet Pairs
(Hooft,Straver,& Spek,(2008). J.Appl.Cryst. 41, 96-103)
PLATON (2012,161012) Bijvoet Pairs=430, Coverage=0.92,
Bayesian Statistics=Student_T (Nu=5.0), P2(true)=1.000,
P3(true)=1.0000, P3(rac-twin)=0.2E-07, P3(false)=0.2E-32,
G= 0.9029, G (su)=0.1504
;
_refine_ls_abs_structure_Flack   0.05(8)
_refine_ls_extinction_coef       0.118(19)
_refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc²λ³/sin(2θ)]^-1/4^
_refine_ls_extinction_method     SHELXL
_refine_ls_goodness_of_fit_ref   1.030
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     72
_refine_ls_number_reflns         965
_refine_ls_number_restraints     1
_refine_ls_restrained_S_all      1.030
_refine_ls_R_factor_all          0.0407
_refine_ls_R_factor_gt           0.0383
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
;
 w=1/[σ²(Fo²)+(0.1000P)²]
 where P=(Fo²+2Fc²)/3
;
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1115
_refine_ls_wR_factor_ref         0.1153
_reflns_number_gt                902
_reflns_number_total             965
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            ry5050.cif
_cod_data_source_block           smpip
_cod_database_code               2105466
_cod_database_fobs_code          2105466
#BEGIN Tags that were not found in dictionaries:
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_shelx_estimated_absorpt_t_min   0.940
_shelx_estimated_absorpt_t_max   0.979
_shelxl_version_number           .002012
#END Tags that were not found in dictionaries
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x, y+1/2, -z'
loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_occupancy
N N1 -0.1048(4) -0.64441(18) -0.4788(2) 0.0212(6) Uani d 1
H H1 0.043(6) -0.591(4) -0.472(4) 0.032 Uiso d 1
N N4 -0.3949(4) -0.92944(19) -0.5176(2) 0.0241(6) Uani d 1
H H4 -0.549(6) -0.980(4) -0.517(4) 0.036 Uiso d 1
C C2 -0.0543(4) -0.7573(3) -0.3192(3) 0.0221(7) Uani d 1
H H2B 0.0880 -0.8324 -0.3323 0.027 Uiso calc 1
C C3 -0.3098(4) -0.8492(2) -0.3314(3) 0.0236(7) Uani d 1
H H3A -0.2792 -0.9278 -0.2262 0.028 Uiso calc 1
H H3B -0.4512 -0.7762 -0.3163 0.028 Uiso calc 1
C C5 -0.4444(4) -0.8152(3) -0.6755(3) 0.0241(7) Uani d 1
H H5A -0.5877 -0.7417 -0.6652 0.029 Uiso calc 1
H H5B -0.5017 -0.8707 -0.8004 0.029 Uiso calc 1
C C6 -0.1910(4) -0.7243(3) -0.6644(3) 0.0236(7) Uani d 1
H H6A -0.0501 -0.7975 -0.6801 0.028 Uiso calc 1
H H6B -0.2222 -0.6457 -0.7696 0.028 Uiso calc 1
C C7 0.0394(4) -0.6695(3) -0.1302(3) 0.0318(6) Uani d 1
H H7B 0.2024 -0.6112 -0.1284 0.048 Uiso calc 1
H H7C 0.0753 -0.7451 -0.0235 0.048 Uiso calc 1
H H7D -0.0990 -0.5955 -0.1166 0.048 Uiso calc 1
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
C6 N1 C2 111.34(16)
C6 N1 H1 109.9(18)
C2 N1 H1 108.5(18)
C5 N4 C3 110.65(16)
C5 N4 H4 110.1(17)
C3 N4 H4 105.4(17)
N1 C2 C7 109.44(18)
N1 C2 C3 108.33(16)
C7 C2 C3 111.90(15)
N1 C2 H2B 109.0
C7 C2 H2B 109.0
C3 C2 H2B 109.0
N4 C3 C2 109.84(15)
N4 C3 H3A 109.7
C2 C3 H3A 109.7
N4 C3 H3B 109.7
C2 C3 H3B 109.7
H3A C3 H3B 108.2
N4 C5 C6 108.86(18)
N4 C5 H5A 109.9
C6 C5 H5A 109.9
N4 C5 H5B 109.9
C6 C5 H5B 109.9
H5A C5 H5B 108.3
N1 C6 C5 109.78(16)
N1 C6 H6A 109.7
C5 C6 H6A 109.7
N1 C6 H6B 109.7
C5 C6 H6B 109.7
H6A C6 H6B 108.2
C2 C7 H7B 109.5
C2 C7 H7C 109.5
H7B C7 H7C 109.5
C2 C7 H7D 109.5
H7B C7 H7D 109.5
H7C C7 H7D 109.5
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
N1 C6 1.460(3)
N1 C2 1.466(3)
N1 H1 0.88(3)
N4 C5 1.464(3)
N4 C3 1.465(3)
N4 H4 0.91(3)
C2 C7 1.515(3)
C2 C3 1.525(3)
C2 H2B 1.0000
C3 H3A 0.9900
C3 H3B 0.9900
C5 C6 1.512(3)
C5 H5A 0.9900
C5 H5B 0.9900
C6 H6A 0.9900
C6 H6B 0.9900
C7 H7B 0.9800
C7 H7C 0.9800
C7 H7D 0.9800
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
C6 N1 C2 C7 178.94(15)
C6 N1 C2 C3 -58.81(19)
C5 N4 C3 C2 -60.0(2)
N1 C2 C3 N4 58.2(2)
C7 C2 C3 N4 178.95(17)
C3 N4 C5 C6 59.6(2)
C2 N1 C6 C5 59.8(2)
N4 C5 C6 N1 -58.7(2)
