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#$Date: 2016-02-20 02:53:41 +0200 (Sat, 20 Feb 2016) $
#$Revision: 176768 $
#$URL: svn://www.crystallography.net/cod/cif/2/10/54/2105467.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2105467
loop_
_publ_author_name
'Reibenspies, Joseph'
'Bhuvanesh, Nattamai'
_publ_section_title
;
 Absolute structure of R-({-})-2-methylpiperazine and
 S-(+)-2-methylpiperazine
;
_journal_coeditor_code           RY5050
_journal_issue                   3
_journal_name_full               'Acta Crystallographica Section B'
_journal_page_first              288
_journal_page_last               293
_journal_paper_doi               10.1107/S2052519213008713
_journal_volume                  69
_journal_year                    2013
_chemical_formula_sum            'C5 H14.71 Br2 N2 O0.36'
_chemical_formula_weight         268.40
_chemical_name_systematic
;
R-(-)-2-methylpiperazinediium dibromide
;
_space_group_crystal_system      monoclinic
_space_group_IT_number           4
_space_group_name_Hall           'P 2yb'
_space_group_name_H-M_alt        'P 1 21 1'
_symmetry_space_group_name_Hall  'P 2yb'
_symmetry_space_group_name_H-M   'P 1 21 1'
_atom_sites_solution_hydrogens   mixed
_audit_creation_method           SHELXL-2012
_cell_angle_alpha                90
_cell_angle_beta                 106.911(2)
_cell_angle_gamma                90
_cell_formula_units_Z            2
_cell_length_a                   6.0418(3)
_cell_length_b                   11.5649(5)
_cell_length_c                   7.1333(3)
_cell_measurement_reflns_used    8198
_cell_measurement_temperature    110(2)
_cell_measurement_theta_max      63.87
_cell_measurement_theta_min      7.54
_cell_volume                     476.87(4)
_computing_cell_refinement       'FRAMBO (Bruker, 2002)'
_computing_data_collection       'FRAMBO (Bruker, 2002)'
_computing_data_reduction        'SAINT (Bruker, 2012b)'
_computing_molecular_graphics    'OLEX-2 (Dolomanov, 2009)'
_computing_publication_material  'Ciftab (Sheldrick, 2008)'
_computing_structure_refinement  'SHELXL-2012 (Sheldrick, 2012)'
_computing_structure_solution    'SHELXS (Sheldrick 2008)'
_diffrn_ambient_temperature      110(2)
_diffrn_measured_fraction_theta_full 0.908
_diffrn_measured_fraction_theta_max 0.988
_diffrn_measurement_device_type  'MWPC area detector'
_diffrn_measurement_method       'phi and omega scans'
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54178
_diffrn_reflns_av_R_equivalents  0.0335
_diffrn_reflns_limit_h_max       6
_diffrn_reflns_limit_h_min       -6
_diffrn_reflns_limit_k_max       13
_diffrn_reflns_limit_k_min       -13
_diffrn_reflns_limit_l_max       8
_diffrn_reflns_limit_l_min       -8
_diffrn_reflns_number            10680
_diffrn_reflns_theta_full        67.679
_diffrn_reflns_theta_max         63.887
_diffrn_reflns_theta_min         6.486
_exptl_absorpt_coefficient_mu    10.281
_exptl_absorpt_correction_T_max  0.4636
_exptl_absorpt_correction_T_min  0.2435
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
SADABS-2009/1 (Bruker,2009) was employed for absorption correction.
wR2(int) was   0.1305 before and   0.0486 after correction.
The ratio of minimum to maximum transmission factors was   0.5252.
Additional spherical absorption correction applied with mu*r =  0.6000.
The λ/2 correction factor of 0.0015 was applied.
;
_exptl_crystal_colour            'colorless '
_exptl_crystal_density_diffrn    1.869
_exptl_crystal_description       'plate     '
_exptl_crystal_F_000             263
_exptl_crystal_size_max          0.210
_exptl_crystal_size_mid          0.110
_exptl_crystal_size_min          0.040
_refine_diff_density_max         0.513
_refine_diff_density_min         -0.644
_refine_ls_abs_structure_details
;
 Flack x determined using 697 quotients [(I+)-(I-)]/[(I+)+(I-)]
 (Parsons and Flack (2004), Acta Cryst. A60, s61).
;
_refine_ls_abs_structure_Flack   0.041(13)
_refine_ls_extinction_coef       0.0158(10)
_refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc²λ³/sin(2θ)]^-1/4^
_refine_ls_extinction_method     SHELXL
_refine_ls_goodness_of_fit_ref   1.029
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     96
_refine_ls_number_reflns         1537
_refine_ls_number_restraints     1
_refine_ls_restrained_S_all      1.028
_refine_ls_R_factor_all          0.0199
_refine_ls_R_factor_gt           0.0196
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
;
 w=1/[σ²(Fo²)+(0.0500P)²+0.0247P]
 where P=(Fo²+2Fc²)/3
;
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0594
_refine_ls_wR_factor_ref         0.0597
_reflns_number_gt                1517
_reflns_number_total             1537
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            ry5050.cif
_cod_data_source_block           rmpipbr
_cod_database_code               2105467
_cod_database_fobs_code          2105467
#BEGIN Tags that were not found in dictionaries:
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_shelx_estimated_absorpt_t_min   0.221
_shelx_estimated_absorpt_t_max   0.684
_shelxl_version_number           .002012
#END Tags that were not found in dictionaries
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x, y+1/2, -z'
loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_occupancy
Br Br1 0.28253(9) 0.12496(5) 0.11627(8) 0.0145(2) Uani d 1
Br Br2 0.89365(10) -0.06055(4) -0.57535(8) 0.0233(2) Uani d 1
O O1W 0.835(2) 0.2119(11) -0.619(2) 0.029(4) Uani d 0.350(12)
H H1W 0.8501 0.1389 -0.6072 0.03(5) Uiso d 0.350(12)
H H2W 0.9067 0.2725 -0.5671 0.02(7) Uiso d 0.350(12)
N N1 0.7332(7) 0.0748(4) -0.0416(7) 0.0131(9) Uani d 1
H H1A 0.8763 0.0866 0.0467 0.016 Uiso calc 1
H H1B 0.6234 0.0869 0.0225 0.016 Uiso calc 1
C C2 0.6980(9) 0.1601(4) -0.2052(8) 0.0147(12) Uani d 1
H H2 0.8214 0.1489 -0.2713 0.018 Uiso calc 1
C C3 0.4633(9) 0.1386(4) -0.3525(8) 0.0119(11) Uani d 1
H H3A 0.3399 0.1545 -0.2902 0.014 Uiso calc 1
H H3B 0.4420 0.1921 -0.4647 0.014 Uiso calc 1
C C5 0.4830(9) -0.0680(5) -0.2591(8) 0.0159(11) Uani d 1
H H5A 0.4767 -0.1480 -0.3097 0.019 Uiso calc 1
H H5B 0.3600 -0.0593 -0.1939 0.019 Uiso calc 1
N N4 0.4427(8) 0.0156(3) -0.4254(7) 0.0141(10) Uani d 1
H H4A 0.2975 0.0040 -0.5104 0.017 Uiso calc 1
H H4B 0.5491 0.0027 -0.4927 0.017 Uiso calc 1
C C6 0.7172(9) -0.0463(6) -0.1122(7) 0.0133(15) Uani d 1
H H6A 0.7394 -0.0998 0.0001 0.016 Uiso calc 1
H H6B 0.8410 -0.0614 -0.1745 0.016 Uiso calc 1
C C7 0.7118(12) 0.2822(6) -0.1271(10) 0.0197(17) Uani d 1
H H7A 0.7113 0.3369 -0.2322 0.030 Uiso calc 1
H H7B 0.8548 0.2916 -0.0196 0.030 Uiso calc 1
H H7C 0.5784 0.2974 -0.0789 0.030 Uiso calc 1
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Br Br -0.6763 1.2805 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
H1W O1W H2W 138.5
C6 N1 C2 112.2(4)
C6 N1 H1A 109.2
C2 N1 H1A 109.2
C6 N1 H1B 109.2
C2 N1 H1B 109.2
H1A N1 H1B 107.9
N1 C2 C7 110.4(5)
N1 C2 C3 108.9(4)
C7 C2 C3 110.4(5)
N1 C2 H2 109.0
C7 C2 H2 109.0
C3 C2 H2 109.0
N4 C3 C2 111.1(4)
N4 C3 H3A 109.4
C2 C3 H3A 109.4
N4 C3 H3B 109.4
C2 C3 H3B 109.4
H3A C3 H3B 108.0
N4 C5 C6 110.2(4)
N4 C5 H5A 109.6
C6 C5 H5A 109.6
N4 C5 H5B 109.6
C6 C5 H5B 109.6
H5A C5 H5B 108.1
C5 N4 C3 111.0(4)
C5 N4 H4A 109.4
C3 N4 H4A 109.4
C5 N4 H4B 109.4
C3 N4 H4B 109.4
H4A N4 H4B 108.0
N1 C6 C5 110.3(4)
N1 C6 H6A 109.6
C5 C6 H6A 109.6
N1 C6 H6B 109.6
C5 C6 H6B 109.6
H6A C6 H6B 108.1
C2 C7 H7A 109.5
C2 C7 H7B 109.5
H7A C7 H7B 109.5
C2 C7 H7C 109.5
H7A C7 H7C 109.5
H7B C7 H7C 109.5
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
O1W H1W 0.8500
O1W H2W 0.8500
N1 C6 1.482(8)
N1 C2 1.495(7)
N1 H1A 0.9200
N1 H1B 0.9200
C2 C7 1.512(9)
C2 C3 1.520(7)
C2 H2 1.0000
C3 N4 1.507(7)
C3 H3A 0.9900
C3 H3B 0.9900
C5 N4 1.494(7)
C5 C6 1.517(7)
C5 H5A 0.9900
C5 H5B 0.9900
N4 H4A 0.9200
N4 H4B 0.9200
C6 H6A 0.9900
C6 H6B 0.9900
C7 H7A 0.9800
C7 H7B 0.9800
C7 H7C 0.9800
