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#$Date: 2022-09-02 04:49:51 +0300 (Fri, 02 Sep 2022) $
#$Revision: 277573 $
#$URL: file:///home/coder/svn-repositories/cod/cif/2/10/90/2109027.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2109027
loop_
_publ_author_name
'Bogdanov, Nikita E.'
'Korabel'nikov, Dmitry V.'
'Fedorov, Igor A.'
'Zakharov, Boris A.'
'Boldyreva, Elena V.'
_publ_section_title
;
 The effect of hydrostatic compression on the crystal structure of
 glycinium phosphite
;
_journal_coeditor_code           XK5096
_journal_issue                   5
_journal_name_full               'Acta Crystallographica Section B'
_journal_page_first
;
;
_journal_paper_doi               10.1107/S2052520622008289
_journal_volume                  78
_journal_year                    2022
_chemical_formula_moiety         'C2 H6 N O2, H2 O3 P'
_chemical_formula_sum            'C2 H8 N O5 P'
_chemical_formula_weight         157.06
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2yab'
_space_group_name_H-M_alt        'P 1 21/a 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-2018/3
_cell_angle_alpha                90
_cell_angle_beta                 100.43(3)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   9.7872(10)
_cell_length_b                   8.4868(5)
_cell_length_c                   7.407(7)
_cell_measurement_pressure       0
_cell_measurement_reflns_used    876
_cell_measurement_temperature    298(2)
_cell_measurement_theta_max      27.1150
_cell_measurement_theta_min      3.1880
_cell_volume                     605.1(6)
_computing_cell_refinement       'CrysAlisPro 1.171.40.53 (Rigaku OD, 2019)'
_computing_data_collection       'CrysAlisPro 1.171.40.53 (Rigaku OD, 2019)'
_computing_data_reduction        'CrysAlisPro 1.171.40.53 (Rigaku OD, 2019)'
_computing_structure_refinement  'SHELXL-2018/3 (Sheldrick, 2018)'
_diffrn_ambient_pressure         0
_diffrn_ambient_temperature      298(2)
_diffrn_detector                 'CCD plate'
_diffrn_detector_area_resol_mean 10.3457
_diffrn_detector_type            Ruby
_diffrn_measured_fraction_theta_full 0.358
_diffrn_measured_fraction_theta_max 0.319
_diffrn_measurement_device       'four-circle diffractometer'
_diffrn_measurement_device_type  'Xcalibur, Ruby, Gemini ultra'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           'Mo K\a'
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0900
_diffrn_reflns_av_unetI/netI     0.0735
_diffrn_reflns_Laue_measured_fraction_full 0.358
_diffrn_reflns_Laue_measured_fraction_max 0.319
_diffrn_reflns_limit_h_max       12
_diffrn_reflns_limit_h_min       -12
_diffrn_reflns_limit_k_max       11
_diffrn_reflns_limit_k_min       -11
_diffrn_reflns_limit_l_max       3
_diffrn_reflns_limit_l_min       -3
_diffrn_reflns_number            3114
_diffrn_reflns_point_group_measured_fraction_full 0.358
_diffrn_reflns_point_group_measured_fraction_max 0.319
_diffrn_reflns_theta_full        25.242
_diffrn_reflns_theta_max         28.125
_diffrn_reflns_theta_min         3.200
_diffrn_source                   'fine-focus sealed X-ray tube'
_diffrn_source_type              'Enhance (Mo) X-ray Source'
_exptl_absorpt_coefficient_mu    0.410
_exptl_absorpt_correction_T_max  1.00000
_exptl_absorpt_correction_T_min  0.19017
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
CrysAlisPro 1.171.40.53 (Rigaku Oxford Diffraction, 2019)
Empirical absorption correction using spherical harmonics,
 implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            white
_exptl_crystal_density_diffrn    1.724
_exptl_crystal_description       plates
_exptl_crystal_F_000             328
_exptl_crystal_size_max          0.21
_exptl_crystal_size_mid          0.10
_exptl_crystal_size_min          0.05
_refine_diff_density_max         0.315
_refine_diff_density_min         -0.386
_refine_diff_density_rms         0.086
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.093
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     83
_refine_ls_number_reflns         469
_refine_ls_number_restraints     46
_refine_ls_restrained_S_all      1.063
_refine_ls_R_factor_all          0.1044
_refine_ls_R_factor_gt           0.0567
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0910P)²] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1269
_refine_ls_wR_factor_ref         0.1650
_reflns_Friedel_coverage         0.000
_reflns_number_gt                309
_reflns_number_total             469
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            xk5096sup1.cif
_cod_data_source_block           new_no_ptm
_cod_original_sg_symbol_H-M      'P 21/a'
_cod_database_code               2109027
_shelx_shelxl_version_number     2018/3
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_oxdiff_exptl_absorpt_empirical_full_min 0.761
_oxdiff_exptl_absorpt_empirical_full_max 4.225
_oxdiff_exptl_absorpt_empirical_details
;
Empirical correction (ABSPACK) includes:
- Absorption correction using spherical harmonics
- Frame scaling
;
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x+1/2, y+1/2, -z'
'-x, -y, -z'
'x-1/2, -y-1/2, z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_site_symmetry_order
_atom_site_calc_flag
_atom_site_refinement_flags_posn
_atom_site_refinement_flags_adp
_atom_site_refinement_flags_occupancy
_atom_site_disorder_assembly
_atom_site_disorder_group
C1 C 0.6992(7) 0.3022(6) 0.783(2) 0.025(6) Uani 1 1 d . U . . .
H1D H 0.611692 0.249895 0.786909 0.030 Uiso 1 1 calc R U . . .
H1E H 0.732704 0.347648 0.903199 0.030 Uiso 1 1 calc R U . . .
C2 C 0.8033(7) 0.1829(6) 0.740(3) 0.021(6) Uani 1 1 d . U . . .
N1 N 0.6770(5) 0.4273(5) 0.646(2) 0.026(7) Uani 1 1 d . U . . .
H1A H 0.642679 0.386285 0.536739 0.031 Uiso 1 1 calc R U . . .
H1B H 0.757446 0.474678 0.641649 0.031 Uiso 1 1 calc R U . . .
H1C H 0.617290 0.497336 0.676336 0.031 Uiso 1 1 calc R U . . .
O1 O 0.4834(7) 0.8653(5) 0.951(2) 0.052(7) Uani 1 1 d D U . . .
H1 H 0.472453 0.961099 0.952185 0.062 Uiso 0.5 1 calc D U P . .
O2 O 0.4675(5) 0.6430(4) 0.7188(17) 0.029(6) Uani 1 1 d . U . . .
O3 O 0.4367(5) 0.9246(5) 0.6057(17) 0.038(7) Uani 1 1 d D U . . .
H3 H 0.495226 0.964511 0.553471 0.045 Uiso 0.5 1 calc D U P . .
O4 O 0.8636(5) 0.1994(5) 0.6163(17) 0.025(7) Uani 1 1 d . U . . .
O5 O 0.8184(5) 0.0634(5) 0.8531(17) 0.033(7) Uani 1 1 d . U . . .
H5 H 0.865937 -0.004479 0.815621 0.040 Uiso 1 1 calc . U . . .
P1 P 0.50817(17) 0.81366(17) 0.7571(8) 0.030(4) Uani 1 1 d . U . . .
H1P H 0.608309 0.821116 0.758790 0.036 Uiso 1 1 calc R U . . .
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle_publ_flag
N1 C1 C2 111.2(12) . . ?
N1 C1 H1D 109.4 . . ?
C2 C1 H1D 109.4 . . ?
N1 C1 H1E 109.4 . . ?
C2 C1 H1E 109.4 . . ?
H1D C1 H1E 108.0 . . ?
O4 C2 O5 125.0(6) . . ?
O4 C2 C1 122.3(11) . . ?
O5 C2 C1 112.7(13) . . ?
C1 N1 H1A 109.5 . . ?
C1 N1 H1B 109.5 . . ?
H1A N1 H1B 109.5 . . ?
C1 N1 H1C 109.5 . . ?
H1A N1 H1C 109.5 . . ?
H1B N1 H1C 109.5 . . ?
P1 O1 H1 109.5 . . ?
P1 O3 H3 109.5 . . ?
C2 O5 H5 109.5 . . ?
O2 P1 O3 112.3(6) . . ?
O2 P1 O1 111.2(6) . . ?
O3 P1 O1 111.9(4) . . ?
O2 P1 H1P 107.0 . . ?
O3 P1 H1P 107.0 . . ?
O1 P1 H1P 107.0 . . ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_site_symmetry_2
_geom_bond_publ_flag
C1 N1 1.458(15) . ?
C1 C2 1.511(11) . ?
C1 H1D 0.9700 . ?
C1 H1E 0.9700 . ?
C2 O4 1.184(17) . ?
C2 O5 1.307(14) . ?
N1 H1A 0.8900 . ?
N1 H1B 0.8900 . ?
N1 H1C 0.8900 . ?
O1 P1 1.560(17) . ?
O1 H1 0.8200 . ?
O2 P1 1.515(4) . ?
O3 P1 1.533(10) . ?
O3 H3 0.8200 . ?
O5 H5 0.8200 . ?
P1 H1P 0.9800 . ?
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
_geom_hbond_publ_flag
N1 H1A O2 0.89 2.02 2.877(19) 162.2 3_666 yes
N1 H1B O3 0.89 2.01 2.899(6) 174.4 4_675 yes
N1 H1C O2 0.89 1.99 2.871(7) 173.1 . yes
O1 H1 O1 0.82 1.66 2.404(13) 149.3 3_677 yes
O3 H3 O3 0.82 1.73 2.515(16) 158.8 3_676 yes
O5 H5 O2 0.82 1.77 2.591(8) 175.6 4_665 yes
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_site_symmetry_1
_geom_torsion_site_symmetry_2
_geom_torsion_site_symmetry_3
_geom_torsion_site_symmetry_4
_geom_torsion_publ_flag
N1 C1 C2 O4 4.8(17) . . . . ?
N1 C1 C2 O5 -175.5(8) . . . . ?

_cod_database_fobs_code 2109027
