#------------------------------------------------------------------------------
#$Date: 2017-10-13 14:42:48 +0300 (Fri, 13 Oct 2017) $
#$Revision: 201982 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/02/18/4021828.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4021828
loop_
_publ_author_name
'Yasushi Morita'
'Eigo Miyazaki'
'Yoshikazu Umemoto'
'Kozo Fukui'
'Kazuhiro Nakasuji'
_publ_contact_author_address
;
Department of Chemistry
Graduate School of Science
Osaka University
Toyonaka, Osaka, 560-0043
Japan
;
_publ_contact_author_email       morita@chem.sci.osaka-u.ac.jp
_publ_contact_author_fax         81-6-6850-5395
_publ_contact_author_name        'Yasushi Morita'
_publ_contact_author_phone       81-6-6850-5393
_publ_section_title
;
 Two-Dimensional Networks of Ethylenedithiotetrathiafulvalene
 Derivatives with the Hydrogen-Bonded Functionality of Uracil,
 and Channel Structure of Its Tetracyanoquinodimethane Complex
;
_journal_name_full               'Journal of Organic Chemistry'
_journal_page_first              5631
_journal_page_last               5637
_journal_paper_doi               10.1021/jo060748l
_journal_volume                  71
_journal_year                    2006
_chemical_formula_moiety         'C18 H12 N2 O2 S6 '
_chemical_formula_sum            'C18 H12 N2 O2 S6'
_chemical_formula_weight         480.67
_chemical_melting_point          519
_chemical_name_common            EDT-TphU
_chemical_name_systematic
; 
2-{4-(N1'-n-Phenyluracil-5'-yl)-1,3-dithiole-2-ylidene}-5,6-dihydro-
1,3-dithiole[4,5-b][1,4]dithiin
;
_space_group_IT_number           15
_symmetry_cell_setting           monoclinic
_symmetry_space_group_name_Hall  '-C 2yc'
_symmetry_space_group_name_H-M   'C 1 2/c 1'
_audit_creation_date             'Tue Jan  4 15:08:50 2005'
_audit_creation_method           'by teXsan'
_cell_angle_alpha                90
_cell_angle_beta                 125.16(2)
_cell_angle_gamma                90
_cell_formula_units_Z            8
_cell_length_a                   36.01(2)
_cell_length_b                   5.545(3)
_cell_length_c                   23.48(1)
_cell_measurement_reflns_used    7371
_cell_measurement_temperature    200.2
_cell_measurement_theta_max      27.5
_cell_measurement_theta_min      3.1
_cell_volume                     3833(3)
_computing_cell_refinement       PROCESS-AUTO
_computing_data_collection       PROCESS-AUTO
_computing_data_reduction        'teXsan Ver. 1.11'
_computing_publication_material  'teXsan Ver. 1.11'
_computing_structure_refinement  'teXsan Ver. 1.10'
_computing_structure_solution    SIR92
_diffrn_detector_area_resol_mean 10.00
_diffrn_measured_fraction_theta_full 0.9893
_diffrn_measured_fraction_theta_max 0.9893
_diffrn_measurement_device_type  'Rigaku RAXIS-RAPID Imaging Plate'
_diffrn_measurement_method       ω
_diffrn_radiation_type           'Mo K\a'
_diffrn_radiation_wavelength     0.7107
_diffrn_reflns_av_R_equivalents  0.070
_diffrn_reflns_limit_h_max       46
_diffrn_reflns_limit_h_min       -45
_diffrn_reflns_limit_k_max       7
_diffrn_reflns_limit_k_min       -7
_diffrn_reflns_limit_l_max       30
_diffrn_reflns_limit_l_min       -30
_diffrn_reflns_number            16617
_diffrn_reflns_theta_full        27.48
_diffrn_reflns_theta_max         27.48
_exptl_absorpt_coefficient_mu    0.732
_exptl_absorpt_correction_T_max  0.985
_exptl_absorpt_correction_T_min  0.359
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details   '(Higashi, 1995)'
_exptl_crystal_colour            orange
_exptl_crystal_density_diffrn    1.665
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       block
_exptl_crystal_size_max          0.400
_exptl_crystal_size_mid          0.050
_exptl_crystal_size_min          0.020
_refine_diff_density_max         0.60
_refine_diff_density_min         -0.56
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.002
_refine_ls_hydrogen_treatment    noref
_refine_ls_number_parameters     253
_refine_ls_number_reflns         2116
_refine_ls_R_factor_gt           0.0501
_refine_ls_shift/su_max          0.0006
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w = 1/[σ²(Fo²) + (0.03000(Max(Fo²,0) + 2Fc²)/3)²]'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_ref         0.1099
_reflns_number_gt                1441
_reflns_number_total             4345
_reflns_threshold_expression     F²>2.0σ(F²)
_cod_data_source_file            jo060748lsi20060410_124547_2.cif
_cod_original_sg_symbol_H-M      'C 2/c'
_cod_original_formula_sum        'C18 H12 N2 O2 S6 '
_cod_database_code               4021828
loop_
_symmetry_equiv_pos_as_xyz
x,y,z
-x,y,1/2-z
-x,-y,-z
x,-y,1/2+z
1/2+x,1/2+y,z
1/2-x,1/2+y,1/2-z
1/2-x,1/2-y,-z
1/2+x,1/2-y,1/2+z
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_calc_flag
S(1) S 0.89763(6) -0.6343(4) 0.80410(9) 0.0409(6) Uani 1.00 d
S(2) S 0.98681(7) -0.5822(4) 0.82637(10) 0.0433(6) Uani 1.00 d
S(3) S 0.85605(6) -0.2010(3) 0.69400(10) 0.0435(6) Uani 1.00 d
S(4) S 0.94344(6) -0.1379(4) 0.71144(10) 0.0434(6) Uani 1.00 d
S(5) S 0.80297(7) 0.0580(4) 0.5576(1) 0.0550(7) Uani 1.00 d
S(6) S 0.90039(7) 0.1450(4) 0.57810(10) 0.0466(6) Uani 1.00 d
O(1) O 0.8850(2) -1.5560(9) 0.9615(2) 0.044(2) Uani 1.00 d
O(2) O 0.9996(2) -1.2308(8) 0.9584(2) 0.041(2) Uani 1.00 d
N(1) N 0.8687(2) -1.213(1) 0.8961(3) 0.036(2) Uani 1.00 d
N(2) N 0.9417(2) -1.3748(10) 0.9607(3) 0.036(2) Uani 1.00 d
C(1) C 0.9306(2) -0.482(1) 0.7823(3) 0.033(2) Uani 1.00 d
C(2) C 0.9400(2) -0.847(1) 0.8592(3) 0.035(2) Uani 1.00 d
C(3) C 0.9801(3) -0.820(1) 0.8682(3) 0.038(2) Uani 1.00 d
C(4) C 0.9123(2) -0.303(1) 0.7357(3) 0.035(2) Uani 1.00 d
C(5) C 0.8547(2) -0.050(1) 0.6273(3) 0.033(2) Uani 1.00 d
C(6) C 0.8949(2) -0.025(1) 0.6351(3) 0.036(2) Uani 1.00 d
C(7) C 0.8174(3) 0.344(1) 0.5353(4) 0.055(3) Uani 1.00 d
C(8) C 0.8670(3) 0.398(1) 0.5734(4) 0.049(3) Uani 1.00 d
C(9) C 0.9275(3) -1.033(1) 0.8898(3) 0.035(2) Uani 1.00 d
C(10) C 0.8845(3) -1.041(1) 0.8722(4) 0.037(2) Uani 1.00 d
C(11) C 0.8974(3) -1.395(1) 0.9414(4) 0.039(2) Uani 1.00 d
C(12) C 0.9602(3) -1.215(1) 0.9388(4) 0.037(2) Uani 1.00 d
C(13) C 0.8221(2) -1.207(1) 0.8740(3) 0.036(2) Uani 1.00 d
C(14) C 0.8074(2) -1.011(1) 0.8913(4) 0.043(2) Uani 1.00 d
C(15) C 0.7623(3) -1.003(1) 0.8691(4) 0.045(3) Uani 1.00 d
C(16) C 0.7331(3) -1.184(2) 0.8296(4) 0.050(3) Uani 1.00 d
C(17) C 0.7481(3) -1.379(2) 0.8117(4) 0.052(3) Uani 1.00 d
C(18) C 0.7930(3) -1.394(1) 0.8328(4) 0.047(2) Uani 1.00 d
H(1) H 1.0046 -0.9263 0.8968 0.0545 Uiso 1.00 calc
H(2) H 0.8780 0.4465 0.6204 0.0689 Uiso 1.00 calc
H(3) H 0.8707 0.5317 0.5517 0.0689 Uiso 1.00 calc
H(4) H 0.8030 0.4720 0.5440 0.0773 Uiso 1.00 calc
H(5) H 0.8043 0.3434 0.4866 0.0773 Uiso 1.00 calc
H(6) H 0.8634 -0.9184 0.8414 0.0522 Uiso 1.00 calc
H(7) H 0.9629 -1.4873 0.9955 0.0570 Uiso 1.00 calc
H(8) H 0.8275 -0.8805 0.9184 0.0615 Uiso 1.00 calc
H(9) H 0.7512 -0.8675 0.8811 0.0670 Uiso 1.00 calc
H(10) H 0.7013 -1.1856 0.8136 0.0774 Uiso 1.00 calc
H(11) H 0.7268 -1.5081 0.7822 0.0761 Uiso 1.00 calc
H(12) H 0.8042 -1.5301 0.8206 0.0657 Uiso 1.00 calc
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.003 0.002
;International Tables for Crystallography
(1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1)
;
H H 0.000 0.000
;International Tables for Crystallography
(1992, Vol. C, Table 6.1.1.2)
;
O O 0.011 0.006
;International Tables for Crystallography
(1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1)
;
N N 0.006 0.003
;International Tables for Crystallography
(1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1)
;
S S 0.125 0.123
;International Tables for Crystallography
(1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1)
;
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_publ_flag
C(1) S(1) C(2) 95.2(3) yes
C(1) S(2) C(3) 94.9(4) yes
C(4) S(3) C(5) 94.7(3) yes
C(4) S(4) C(6) 94.0(3) yes
C(5) S(5) C(7) 104.0(4) yes
C(6) S(6) C(8) 95.8(3) yes
C(10) N(1) C(11) 120.7(6) yes
C(10) N(1) C(13) 120.2(6) yes
C(11) N(1) C(13) 119.2(6) yes
C(11) N(2) C(12) 130.0(6) yes
S(1) C(1) S(2) 114.9(4) yes
S(1) C(1) C(4) 119.8(5) yes
S(2) C(1) C(4) 125.3(6) yes
S(1) C(2) C(3) 115.9(5) yes
S(1) C(2) C(9) 116.7(5) yes
C(3) C(2) C(9) 127.5(6) yes
S(2) C(3) C(2) 118.9(6) yes
S(3) C(4) S(4) 113.1(4) yes
S(3) C(4) C(1) 124.2(5) yes
S(4) C(4) C(1) 122.7(5) yes
S(3) C(5) S(5) 118.1(4) yes
S(3) C(5) C(6) 116.6(5) yes
S(5) C(5) C(6) 125.2(5) yes
S(4) C(6) S(6) 119.5(4) yes
S(4) C(6) C(5) 117.6(5) yes
S(6) C(6) C(5) 122.4(5) yes
S(5) C(7) C(8) 116.0(5) yes
S(6) C(8) C(7) 113.8(5) yes
C(2) C(9) C(10) 119.4(6) yes
C(2) C(9) C(12) 122.0(7) yes
C(10) C(9) C(12) 118.5(6) yes
N(1) C(10) C(9) 124.2(6) yes
O(1) C(11) N(1) 123.5(7) yes
O(1) C(11) N(2) 123.1(7) yes
N(1) C(11) N(2) 113.4(7) yes
O(2) C(12) N(2) 121.5(6) yes
O(2) C(12) C(9) 125.5(7) yes
N(2) C(12) C(9) 113.0(7) yes
N(1) C(13) C(14) 118.6(7) yes
N(1) C(13) C(18) 119.1(7) yes
C(14) C(13) C(18) 122.2(7) yes
C(13) C(14) C(15) 118.9(7) yes
C(14) C(15) C(16) 120.3(7) yes
C(15) C(16) C(17) 120.4(7) yes
C(16) C(17) C(18) 120.9(7) yes
C(13) C(18) C(17) 117.2(7) yes
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_publ_flag
S(1) C(1) 1.758(7) yes
S(1) C(2) 1.767(7) yes
S(2) C(1) 1.749(7) yes
S(2) C(3) 1.740(7) yes
S(3) C(4) 1.760(7) yes
S(3) C(5) 1.753(7) yes
S(4) C(4) 1.776(7) yes
S(4) C(6) 1.747(7) yes
S(5) C(5) 1.730(7) yes
S(5) C(7) 1.837(8) yes
S(6) C(6) 1.741(7) yes
S(6) C(8) 1.810(8) yes
O(1) C(11) 1.209(8) yes
O(2) C(12) 1.214(8) yes
N(1) C(10) 1.385(8) yes
N(1) C(11) 1.397(9) yes
N(1) C(13) 1.444(8) yes
N(2) C(11) 1.388(9) yes
N(2) C(12) 1.377(9) yes
C(1) C(4) 1.336(9) yes
C(2) C(3) 1.342(9) yes
C(2) C(9) 1.469(9) yes
C(5) C(6) 1.356(9) yes
C(7) C(8) 1.50(1) yes
C(9) C(10) 1.355(9) yes
C(9) C(12) 1.470(9) yes
C(13) C(14) 1.369(10) yes
C(13) C(18) 1.391(9) yes
C(14) C(15) 1.392(10) yes
C(15) C(16) 1.36(1) yes
C(16) C(17) 1.38(1) yes
C(17) C(18) 1.397(10) yes
loop_
_geom_contact_atom_site_label_1
_geom_contact_atom_site_label_2
_geom_contact_distance
_geom_contact_site_symmetry_2
_geom_contact_publ_flag
S(1) N(2) 3.376(5) 1_565 yes
S(1) C(11) 3.490(7) 1_565 yes
S(1) C(12) 3.506(7) 1_565 yes
S(2) O(2) 3.462(5) 1_565 yes
S(4) S(4) 3.373(4) 2_756 yes
S(4) C(3) 3.579(7) 1_565 yes
S(5) C(7) 3.598(9) 7_656 yes
S(6) O(1) 3.353(5) 4_544 yes
S(6) C(11) 3.442(7) 4_544 yes
O(1) C(8) 3.168(9) 4_545 yes
O(1) C(10) 3.404(8) 1_545 yes
O(1) C(14) 3.406(9) 1_545 yes
O(2) N(2) 2.870(7) 3_727 yes
O(2) C(12) 3.162(8) 3_737 yes
O(2) O(2) 3.209(9) 3_737 yes
O(2) C(9) 3.311(8) 3_737 yes
O(2) C(2) 3.540(8) 3_737 yes
O(2) O(2) 3.559(9) 3_727 yes
N(2) C(3) 3.494(8) 3_737 yes
N(2) C(2) 3.519(8) 1_545 yes
C(1) C(12) 3.511(9) 1_565 yes
C(1) C(9) 3.592(9) 1_565 yes
C(2) C(4) 3.532(9) 1_545 yes
C(4) C(8) 3.573(10) 1_545 yes
C(5) C(8) 3.438(10) 1_545 yes
C(6) C(8) 3.414(10) 1_545 yes
C(12) C(12) 3.56(1) 3_737 yes
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_publ_flag
S(1) C(1) S(2) C(3) 5.0(4) yes
S(1) C(1) C(4) S(3) 1.2(8) yes
S(1) C(1) C(4) S(4) 179.3(4) yes
S(1) C(2) C(3) S(2) 0.4(8) yes
S(1) C(2) C(9) C(10) 3.2(9) yes
S(1) C(2) C(9) C(12) -177.4(5) yes
S(2) C(1) S(1) C(2) -4.9(4) yes
S(2) C(1) C(4) S(3) -178.1(4) yes
S(2) C(1) C(4) S(4) 0.0(9) yes
S(2) C(3) C(2) C(9) -179.7(5) yes
S(3) C(4) S(4) C(6) -19.6(4) yes
S(3) C(5) S(5) C(7) 143.5(4) yes
S(3) C(5) C(6) S(4) -1.9(8) yes
S(3) C(5) C(6) S(6) -173.7(4) yes
S(4) C(4) S(3) C(5) 18.9(4) yes
S(4) C(6) S(6) C(8) -127.6(4) yes
S(4) C(6) C(5) S(5) 177.6(4) yes
S(5) C(5) S(3) C(4) 170.0(4) yes
S(5) C(5) C(6) S(6) 5.8(9) yes
S(5) C(7) C(8) S(6) 45.3(7) yes
S(6) C(6) S(4) C(4) -174.9(4) yes
O(1) C(11) N(1) C(10) -176.7(7) yes
O(1) C(11) N(1) C(13) 2(1) yes
O(1) C(11) N(2) C(12) 174.9(7) yes
O(2) C(12) N(2) C(11) -175.7(6) yes
O(2) C(12) C(9) C(2) 0(1) yes
O(2) C(12) C(9) C(10) 179.1(7) yes
N(1) C(10) C(9) C(2) 177.8(6) yes
N(1) C(10) C(9) C(12) -1(1) yes
N(1) C(11) N(2) C(12) -4.7(10) yes
N(1) C(13) C(14) C(15) 178.9(6) yes
N(1) C(13) C(18) C(17) -179.0(6) yes
N(2) C(11) N(1) C(10) 2.9(9) yes
N(2) C(11) N(1) C(13) -177.6(6) yes
N(2) C(12) C(9) C(2) -179.1(6) yes
N(2) C(12) C(9) C(10) 0.3(9) yes
C(1) S(1) C(2) C(3) 2.7(6) yes
C(1) S(1) C(2) C(9) -177.2(5) yes
C(1) S(2) C(3) C(2) -3.3(6) yes
C(1) C(4) S(3) C(5) -162.9(6) yes
C(1) C(4) S(4) C(6) 162.2(6) yes
C(2) S(1) C(1) C(4) 175.8(5) yes
C(3) S(2) C(1) C(4) -175.7(6) yes
C(3) C(2) C(9) C(10) -176.7(7) yes
C(3) C(2) C(9) C(12) 2(1) yes
C(4) S(3) C(5) C(6) -10.5(6) yes
C(4) S(4) C(6) C(5) 13.1(6) yes
C(5) S(5) C(7) C(8) 7.0(7) yes
C(5) C(6) S(6) C(8) 44.1(7) yes
C(6) S(6) C(8) C(7) -69.7(6) yes
C(6) C(5) S(5) C(7) -36.1(7) yes
C(9) C(10) N(1) C(11) 0(1) yes
C(9) C(10) N(1) C(13) -179.5(6) yes
C(9) C(12) N(2) C(11) 3.2(10) yes
C(10) N(1) C(13) C(14) -62.7(9) yes
C(10) N(1) C(13) C(18) 113.9(7) yes
C(11) N(1) C(13) C(14) 117.8(7) yes
C(11) N(1) C(13) C(18) -65.6(8) yes
C(13) C(14) C(15) C(16) -1(1) yes
C(13) C(18) C(17) C(16) 1(1) yes
C(14) C(13) C(18) C(17) -2(1) yes
C(14) C(15) C(16) C(17) 0(1) yes
C(15) C(14) C(13) C(18) 2(1) yes
C(15) C(16) C(17) C(18) 0(1) yes
C(15) C(16) C(17) C(18) 0(1) yes
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 ChemSpider 10018744
