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#$Date: 2019-11-23 18:00:33 +0200 (Sat, 23 Nov 2019) $
#$Revision: 234337 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/03/61/4036164.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4036164
loop_
_publ_author_name
'Chernykh, Anton V.'
'Radchenko, Dmytro S.'
'Grygorenko, Oleksandr O.'
'Daniliuc, Constantin G.'
'Volochnyuk, Dmitriy M.'
'Komarov, Igor V.'
_publ_section_title
;
 Synthesis and structural analysis of angular monoprotected diamines based
 on spiro[3.3]heptane scaffold.
;
_journal_issue                   8
_journal_name_full               'The Journal of organic chemistry'
_journal_page_first              3974
_journal_page_last               3981
_journal_paper_doi               10.1021/acs.joc.5b00323
_journal_volume                  80
_journal_year                    2015
_chemical_absolute_configuration ad
_chemical_formula_sum            'C12 H21 N O3 S'
_chemical_formula_weight         259.36
_space_group_IT_number           154
_space_group_name_Hall           'P 32 2"'
_space_group_name_H-M_alt        'P 32 2 1'
_symmetry_cell_setting           trigonal
_symmetry_space_group_name_H-M   'P 32 2 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-97
_cell_angle_alpha                90.00
_cell_angle_beta                 90.00
_cell_angle_gamma                120.00
_cell_formula_units_Z            6
_cell_length_a                   9.1098(2)
_cell_length_b                   9.1098(2)
_cell_length_c                   29.0236(8)
_cell_measurement_reflns_used    3510
_cell_measurement_temperature    223(2)
_cell_measurement_theta_max      68.25
_cell_measurement_theta_min      0.88
_cell_volume                     2085.93(9)
_computing_cell_refinement       'Collect (Nonius B.V., 1998)'
_computing_data_collection       'Collect (Nonius B.V., 1998)'
_computing_data_reduction        'Denzo-SMN (Otwinowski & Minor, 1997)'
_computing_molecular_graphics    'XP (BrukerAXS, 2000)'
_computing_publication_material  'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_refinement  'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_solution    'SHELXS-97 (Sheldrick, 1990)'
_diffrn_ambient_temperature      223(2)
_diffrn_measured_fraction_theta_full 0.988
_diffrn_measured_fraction_theta_max 0.989
_diffrn_measurement_device_type  'Nonius KappaCCD APEXII'
_diffrn_measurement_method       'ω and φ scans'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_source         'fine-focus sealed tube'
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54178
_diffrn_reflns_av_R_equivalents  0.034
_diffrn_reflns_av_sigmaI/netI    0.0886
_diffrn_reflns_limit_h_max       10
_diffrn_reflns_limit_h_min       -10
_diffrn_reflns_limit_k_max       8
_diffrn_reflns_limit_k_min       -8
_diffrn_reflns_limit_l_max       34
_diffrn_reflns_limit_l_min       -30
_diffrn_reflns_number            13380
_diffrn_reflns_theta_full        66.99
_diffrn_reflns_theta_max         66.99
_diffrn_reflns_theta_min         4.57
_exptl_absorpt_coefficient_mu    2.056
_exptl_absorpt_correction_T_max  0.9409
_exptl_absorpt_correction_T_min  0.4718
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
'Denzo (Otwinowski, Borek, Majewski & Minor, 2003)'
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.239
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       needle
_exptl_crystal_F_000             840
_exptl_crystal_size_max          0.43
_exptl_crystal_size_mid          0.07
_exptl_crystal_size_min          0.03
_refine_diff_density_max         0.405
_refine_diff_density_min         -0.434
_refine_diff_density_rms         0.050
_refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881'
_refine_ls_abs_structure_Flack   0.02(2)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.046
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     165
_refine_ls_number_reflns         2428
_refine_ls_number_restraints     2
_refine_ls_restrained_S_all      1.046
_refine_ls_R_factor_all          0.0458
_refine_ls_R_factor_gt           0.0438
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[σ²(Fo²)+(0.0263P)²+0.7127P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0970
_refine_ls_wR_factor_ref         0.0983
_reflns_number_gt                2337
_reflns_number_total             2428
_reflns_threshold_expression     >2sigma(I)
_cod_data_source_file            jo5b00323_si_002.cif
_cod_data_source_block           haf7321
_cod_original_sg_symbol_H-M      P3(2)21
_cod_database_code               4036164
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-y, x-y, z+2/3'
'-x+y, -x, z+1/3'
'y, x, -z'
'x-y, -y, -z+1/3'
'-x, -x+y, -z+2/3'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
_atom_site_refinement_flags
S1 S 0.01107(7) 0.71621(7) 0.124091(15) 0.03107(17) Uani 1 1 d .
O1 O 0.0123(2) 0.7353(3) 0.17501(5) 0.0542(6) Uani 1 1 d .
O2 O 0.1592(3) 1.0131(3) -0.07062(8) 0.0742(7) Uani 1 1 d .
O3 O 0.4116(2) 1.2310(3) -0.08690(6) 0.0515(5) Uani 1 1 d D
H02 H 0.350(4) 1.242(4) -0.1076(9) 0.071(10) Uiso 1 1 d D
N1 N 0.1205(3) 0.8995(3) 0.09918(7) 0.0368(5) Uani 1 1 d D
H01 H 0.090(3) 0.974(3) 0.1057(9) 0.039(7) Uiso 1 1 d D
C1 C 0.3054(3) 0.9775(3) 0.09697(6) 0.0303(5) Uani 1 1 d .
H1 H 0.3584 1.0810 0.1163 0.036 Uiso 1 1 calc R
C2 C 0.3919(3) 0.8725(3) 0.10658(7) 0.0396(6) Uani 1 1 d .
H2A H 0.3234 0.7525 0.0982 0.048 Uiso 1 1 calc R
H2B H 0.4380 0.8860 0.1378 0.048 Uiso 1 1 calc R
C3 C 0.5245(3) 0.9833(3) 0.06982(8) 0.0397(6) Uani 1 1 d .
H3A H 0.6235 1.0839 0.0824 0.048 Uiso 1 1 calc R
H3B H 0.5586 0.9200 0.0494 0.048 Uiso 1 1 calc R
C4 C 0.3896(3) 1.0188(3) 0.04903(7) 0.0310(5) Uani 1 1 d .
C5 C 0.4344(3) 1.1764(3) 0.02039(6) 0.0306(5) Uani 1 1 d .
H5A H 0.5530 1.2665 0.0232 0.037 Uiso 1 1 calc R
H5B H 0.3572 1.2208 0.0249 0.037 Uiso 1 1 calc R
C6 C 0.3966(3) 1.0653(3) -0.02349(7) 0.0329(5) Uani 1 1 d .
H6 H 0.5011 1.0683 -0.0344 0.039 Uiso 1 1 calc R
C7 C 0.2935(3) 0.9093(3) 0.00734(7) 0.0376(6) Uani 1 1 d .
H7A H 0.1717 0.8693 0.0077 0.045 Uiso 1 1 calc R
H7B H 0.3151 0.8159 0.0014 0.045 Uiso 1 1 calc R
C8 C 0.3088(3) 1.0960(3) -0.06269(7) 0.0377(5) Uani 1 1 d .
C9 C -0.2056(3) 0.6596(4) 0.10648(7) 0.0396(6) Uani 1 1 d .
C10 C -0.3122(4) 0.4778(4) 0.12293(10) 0.0606(8) Uani 1 1 d .
H10A H -0.3086 0.4747 0.1563 0.091 Uiso 1 1 calc R
H10B H -0.2677 0.4096 0.1101 0.091 Uiso 1 1 calc R
H10C H -0.4285 0.4330 0.1129 0.091 Uiso 1 1 calc R
C11 C -0.2577(4) 0.7762(4) 0.12994(11) 0.0588(8) Uani 1 1 d .
H11A H -0.3776 0.7336 0.1248 0.088 Uiso 1 1 calc R
H11B H -0.1928 0.8894 0.1172 0.088 Uiso 1 1 calc R
H11C H -0.2360 0.7799 0.1628 0.088 Uiso 1 1 calc R
C12 C -0.2099(4) 0.6689(5) 0.05400(8) 0.0672(10) Uani 1 1 d .
H12A H -0.3261 0.6232 0.0438 0.101 Uiso 1 1 calc R
H12B H -0.1633 0.6034 0.0406 0.101 Uiso 1 1 calc R
H12C H -0.1430 0.7861 0.0442 0.101 Uiso 1 1 calc R
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
S S 0.3331 0.5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
O1 S1 N1 110.91(12)
O1 S1 C9 104.60(11)
N1 S1 C9 100.66(11)
C8 O3 H02 106(2)
C1 N1 S1 118.92(16)
C1 N1 H01 111.5(19)
S1 N1 H01 115.6(18)
N1 C1 C2 120.79(19)
N1 C1 C4 117.96(18)
C2 C1 C4 88.18(16)
N1 C1 H1 109.4
C2 C1 H1 109.4
C4 C1 H1 109.4
C1 C2 C3 86.81(17)
C1 C2 H2A 114.2
C3 C2 H2A 114.2
C1 C2 H2B 114.2
C3 C2 H2B 114.2
H2A C2 H2B 111.3
C4 C3 C2 87.88(17)
C4 C3 H3A 114.0
C2 C3 H3A 114.0
C4 C3 H3B 114.0
C2 C3 H3B 114.0
H3A C3 H3B 111.2
C5 C4 C7 88.80(16)
C5 C4 C3 123.0(2)
C7 C4 C3 115.4(2)
C5 C4 C1 125.94(19)
C7 C4 C1 120.04(19)
C3 C4 C1 86.97(16)
C4 C5 C6 88.04(16)
C4 C5 H5A 114.0
C6 C5 H5A 114.0
C4 C5 H5B 114.0
C6 C5 H5B 114.0
H5A C5 H5B 111.2
C8 C6 C7 118.6(2)
C8 C6 C5 117.8(2)
C7 C6 C5 87.65(15)
C8 C6 H6 110.3
C7 C6 H6 110.3
C5 C6 H6 110.3
C4 C7 C6 88.40(17)
C4 C7 H7A 113.9
C6 C7 H7A 113.9
C4 C7 H7B 113.9
C6 C7 H7B 113.9
H7A C7 H7B 111.1
O2 C8 O3 122.5(2)
O2 C8 C6 124.8(2)
O3 C8 C6 112.6(2)
C10 C9 C11 111.5(2)
C10 C9 C12 110.7(3)
C11 C9 C12 112.4(3)
C10 C9 S1 103.26(19)
C11 C9 S1 110.14(19)
C12 C9 S1 108.3(2)
C9 C10 H10A 109.5
C9 C10 H10B 109.5
H10A C10 H10B 109.5
C9 C10 H10C 109.5
H10A C10 H10C 109.5
H10B C10 H10C 109.5
C9 C11 H11A 109.5
C9 C11 H11B 109.5
H11A C11 H11B 109.5
C9 C11 H11C 109.5
H11A C11 H11C 109.5
H11B C11 H11C 109.5
C9 C12 H12A 109.5
C9 C12 H12B 109.5
H12A C12 H12B 109.5
C9 C12 H12C 109.5
H12A C12 H12C 109.5
H12B C12 H12C 109.5
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
S1 O1 1.4876(15)
S1 N1 1.625(2)
S1 C9 1.845(3)
O2 C8 1.205(3)
O3 C8 1.316(3)
O3 H02 0.858(18)
N1 C1 1.466(3)
N1 H01 0.872(17)
C1 C2 1.539(3)
C1 C4 1.542(2)
C1 H1 0.9900
C2 C3 1.548(3)
C2 H2A 0.9800
C2 H2B 0.9800
C3 C4 1.541(3)
C3 H3A 0.9800
C3 H3B 0.9800
C4 C5 1.527(3)
C4 C7 1.534(3)
C5 C6 1.555(3)
C5 H5A 0.9800
C5 H5B 0.9800
C6 C8 1.496(3)
C6 C7 1.538(3)
C6 H6 0.9900
C7 H7A 0.9800
C7 H7B 0.9800
C9 C10 1.518(4)
C9 C11 1.524(4)
C9 C12 1.527(3)
C10 H10A 0.9700
C10 H10B 0.9700
C10 H10C 0.9700
C11 H11A 0.9700
C11 H11B 0.9700
C11 H11C 0.9700
C12 H12A 0.9700
C12 H12B 0.9700
C12 H12C 0.9700
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
O3 H02 O1 0.858(18) 1.77(2) 2.612(2) 167(3) 2_674
N1 H01 O2 0.872(17) 2.36(2) 3.091(3) 142(2) 4_465
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
O1 S1 N1 C1 81.2(2)
C9 S1 N1 C1 -168.53(17)
S1 N1 C1 C2 15.2(3)
S1 N1 C1 C4 121.17(19)
N1 C1 C2 C3 145.56(19)
C4 C1 C2 C3 23.74(17)
C1 C2 C3 C4 -23.76(17)
C2 C3 C4 C5 155.5(2)
C2 C3 C4 C7 -98.3(2)
C2 C3 C4 C1 23.71(18)
N1 C1 C4 C5 82.5(3)
C2 C1 C4 C5 -153.2(2)
N1 C1 C4 C7 -30.4(3)
C2 C1 C4 C7 93.8(2)
N1 C1 C4 C3 -148.1(2)
C2 C1 C4 C3 -23.86(18)
C7 C4 C5 C6 -19.98(18)
C3 C4 C5 C6 99.8(2)
C1 C4 C5 C6 -147.1(2)
C4 C5 C6 C8 141.3(2)
C4 C5 C6 C7 19.93(18)
C5 C4 C7 C6 20.20(18)
C3 C4 C7 C6 -106.1(2)
C1 C4 C7 C6 152.0(2)
C8 C6 C7 C4 -140.4(2)
C5 C6 C7 C4 -19.84(18)
C7 C6 C8 O2 4.7(4)
C5 C6 C8 O2 -98.8(3)
C7 C6 C8 O3 -178.6(2)
C5 C6 C8 O3 77.8(3)
O1 S1 C9 C10 -72.7(2)
N1 S1 C9 C10 172.14(17)
O1 S1 C9 C11 46.5(2)
N1 S1 C9 C11 -68.63(19)
O1 S1 C9 C12 169.8(2)
N1 S1 C9 C12 54.7(3)
