#------------------------------------------------------------------------------
#$Date: 2019-11-23 21:18:52 +0200 (Sat, 23 Nov 2019) $
#$Revision: 235051 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/03/66/4036667.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4036667
loop_
_publ_author_name
'Dziuganowska, Zofia A.'
'Ślepokura, Katarzyna'
'Volle, Jean-Noël'
'Virieux, David'
'Pirat, Jean-Luc'
'Kafarski, Paweł'
_publ_section_title
;
 Structural Analogues of Selfotel.
;
_journal_issue                   12
_journal_name_full               'The Journal of organic chemistry'
_journal_page_first              4947
_journal_page_last               4954
_journal_paper_doi               10.1021/acs.joc.6b00220
_journal_volume                  81
_journal_year                    2016
_chemical_formula_moiety         'C6 H12 N O5 P'
_chemical_formula_sum            'C6 H12 N O5 P'
_chemical_formula_weight         209.14
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2yn'
_space_group_name_H-M_alt        'P 1 21/n 1'
_atom_sites_solution_hydrogens   difmap
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-2013
_cell_angle_alpha                90
_cell_angle_beta                 95.51(3)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   5.930(2)
_cell_length_b                   13.177(3)
_cell_length_c                   11.050(3)
_cell_measurement_reflns_used    10098
_cell_measurement_temperature    100(2)
_cell_measurement_theta_max      38.51
_cell_measurement_theta_min      4.62
_cell_volume                     859.5(4)
_computing_cell_refinement
;
CrysAlis RED, Oxford Diffraction Ltd.,
Version 1.171.33.66 (release 28-04-2010 CrysAlis171 .NET)
(compiled Apr 28 2010,14:27:37)
;
_computing_data_collection
;
CrysAlis CCD, Oxford Diffraction Ltd.,
Version 1.171.33.66 (release 28-04-2010 CrysAlis171 .NET)
(compiled Apr 28 2010,14:27:37)
;
_computing_data_reduction
;
CrysAlis RED, Oxford Diffraction Ltd.,
Version 1.171.33.66 (release 28-04-2010 CrysAlis171 .NET)
(compiled Apr 28 2010,14:27:37)
;
_computing_structure_refinement  'SHELXL-2013 (Sheldrick, 2008)'
_computing_structure_solution    'SHELXs-97 (Sheldrick, 2008)'
_diffrn_ambient_temperature      100(2)
_diffrn_measured_fraction_theta_full 0.994
_diffrn_measured_fraction_theta_max 0.979
_diffrn_measurement_device_type
;
Xcalibur PX kappa-geometry diffractometer with an Onyx 
CCD camera 
;
_diffrn_measurement_method       'omega and phi scans'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0316
_diffrn_reflns_av_unetI/netI     0.0288
_diffrn_reflns_Laue_measured_fraction_full 0.994
_diffrn_reflns_Laue_measured_fraction_max 0.979
_diffrn_reflns_limit_h_max       7
_diffrn_reflns_limit_h_min       -10
_diffrn_reflns_limit_k_max       20
_diffrn_reflns_limit_k_min       -22
_diffrn_reflns_limit_l_max       19
_diffrn_reflns_limit_l_min       -19
_diffrn_reflns_number            19628
_diffrn_reflns_point_group_measured_fraction_full 0.994
_diffrn_reflns_point_group_measured_fraction_max 0.979
_diffrn_reflns_theta_full        25.242
_diffrn_reflns_theta_max         38.582
_diffrn_reflns_theta_min         4.636
_diffrn_source                   'Enhance (Mo) X-ray Source'
_exptl_absorpt_coefficient_mu    0.311
_exptl_absorpt_correction_T_max  1.000
_exptl_absorpt_correction_T_min  0.912
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
CrysAlis RED, Oxford Diffraction Ltd.,
Version 1.171.33.66 (release 28-04-2010 CrysAlis171 .NET)
(compiled Apr 28 2010,14:27:37)
Empirical absorption correction using spherical harmonics,
 implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.616
_exptl_crystal_description       plate
_exptl_crystal_F_000             440
_exptl_crystal_size_max          0.27
_exptl_crystal_size_mid          0.24
_exptl_crystal_size_min          0.05
_refine_diff_density_max         0.540
_refine_diff_density_min         -0.383
_refine_diff_density_rms         0.073
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.084
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     120
_refine_ls_number_reflns         4766
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.084
_refine_ls_R_factor_all          0.0468
_refine_ls_R_factor_gt           0.0328
_refine_ls_shift/su_max          0.001
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0522P)²+0.0814P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0927
_refine_ls_wR_factor_ref         0.0978
_reflns_Friedel_coverage         0.000
_reflns_number_gt                3757
_reflns_number_total             4766
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            jo6b00220_si_003.cif
_cod_data_source_block           19_zd093
_cod_original_sg_symbol_H-M      'P 21/n'
_cod_database_code               4036667
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_shelx_estimated_absorpt_t_min   0.921
_shelx_estimated_absorpt_t_max   0.985
_shelxl_version_number           2013-4
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x+1/2, y+1/2, -z+1/2'
'-x, -y, -z'
'x-1/2, -y-1/2, z-1/2'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_site_symmetry_order
_atom_site_calc_flag
_atom_site_refinement_flags_posn
_atom_site_refinement_flags_adp
P1 P 0.51164(3) 0.16371(2) 0.49952(2) 0.01043(5) Uani 1 1 d . .
O1 O 0.68366(10) 0.09329(4) 0.56527(5) 0.01453(11) Uani 1 1 d . .
O2 O 0.39681(11) 0.23661(5) 0.57984(6) 0.01695(12) Uani 1 1 d . .
O3 O 0.32058(11) 0.10187(5) 0.42385(6) 0.01840(12) Uani 1 1 d . .
H3 H 0.3469 0.0395 0.4321 0.028 Uiso 1 1 calc R U
O4 O 0.39421(11) 0.51609(5) 0.32916(7) 0.01992(13) Uani 1 1 d . .
O5 O 0.73707(11) 0.58802(5) 0.36883(6) 0.01837(12) Uani 1 1 d . .
H5 H 0.6626 0.6380 0.3902 0.028 Uiso 1 1 calc R U
N1 N 0.57089(11) 0.35410(5) 0.21014(6) 0.01100(11) Uani 1 1 d . .
H1A H 0.6556 0.3114 0.1563 0.013 Uiso 1 1 calc R U
H1B H 0.4472 0.3879 0.1587 0.013 Uiso 1 1 calc R U
C2 C 0.72719(13) 0.43361(6) 0.26664(7) 0.01117(12) Uani 1 1 d . .
H2A H 0.8046 0.4659 0.2000 0.013 Uiso 1 1 calc R U
C3 C 0.90962(13) 0.38266(6) 0.35322(7) 0.01267(13) Uani 1 1 d . .
H3A H 1.0050 0.3392 0.3057 0.015 Uiso 1 1 calc R U
H3B H 1.0081 0.4355 0.3942 0.015 Uiso 1 1 calc R U
C4 C 0.80854(13) 0.31799(6) 0.44924(7) 0.01206(12) Uani 1 1 d . .
H4A H 0.7238 0.3620 0.5017 0.014 Uiso 1 1 calc R U
H4B H 0.9319 0.2844 0.5012 0.014 Uiso 1 1 calc R U
C5 C 0.64836(13) 0.23715(6) 0.38826(6) 0.01049(12) Uani 1 1 d . .
H5A H 0.7395 0.1899 0.3416 0.013 Uiso 1 1 calc R U
C6 C 0.46803(13) 0.28654(6) 0.29970(7) 0.01159(12) Uani 1 1 d . .
H6A H 0.3773 0.2330 0.2551 0.014 Uiso 1 1 calc R U
H6B H 0.3648 0.3271 0.3459 0.014 Uiso 1 1 calc R U
C7 C 0.59650(14) 0.51616(6) 0.32576(7) 0.01217(13) Uani 1 1 d . .
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
O1 P1 O2 115.37(4)
O1 P1 O3 110.88(4)
O2 P1 O3 107.42(4)
O1 P1 C5 109.14(4)
O2 P1 C5 108.31(4)
O3 P1 C5 105.21(4)
P1 O3 H3 109.5
C7 O5 H5 109.5
C2 N1 C6 114.49(6)
C2 N1 H1A 108.6
C6 N1 H1A 108.6
C2 N1 H1B 108.6
C6 N1 H1B 108.6
H1A N1 H1B 107.6
N1 C2 C7 111.10(6)
N1 C2 C3 109.06(6)
C7 C2 C3 113.88(6)
N1 C2 H2A 107.5
C7 C2 H2A 107.5
C3 C2 H2A 107.5
C4 C3 C2 112.23(6)
C4 C3 H3A 109.2
C2 C3 H3A 109.2
C4 C3 H3B 109.2
C2 C3 H3B 109.2
H3A C3 H3B 107.9
C3 C4 C5 110.42(6)
C3 C4 H4A 109.6
C5 C4 H4A 109.6
C3 C4 H4B 109.6
C5 C4 H4B 109.6
H4A C4 H4B 108.1
C6 C5 C4 110.55(6)
C6 C5 P1 109.32(6)
C4 C5 P1 111.68(5)
C6 C5 H5A 108.4
C4 C5 H5A 108.4
P1 C5 H5A 108.4
N1 C6 C5 111.80(6)
N1 C6 H6A 109.3
C5 C6 H6A 109.3
N1 C6 H6B 109.3
C5 C6 H6B 109.3
H6A C6 H6B 107.9
O4 C7 O5 125.88(8)
O4 C7 C2 124.33(7)
O5 C7 C2 109.77(7)
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
P1 O1 1.5123(7)
P1 O2 1.5133(7)
P1 O3 1.5700(8)
P1 C5 1.8157(9)
O3 H3 0.8400
O4 C7 1.2038(11)
O5 C7 1.3198(10)
O5 H5 0.8400
N1 C2 1.4951(10)
N1 C6 1.5033(10)
N1 H1A 0.9900
N1 H1B 0.9900
C2 C7 1.5192(11)
C2 C3 1.5290(11)
C2 H2A 1.0000
C3 C4 1.5275(11)
C3 H3A 0.9900
C3 H3B 0.9900
C4 C5 1.5388(11)
C4 H4A 0.9900
C4 H4B 0.9900
C5 C6 1.5244(11)
C5 H5A 1.0000
C6 H6A 0.9900
C6 H6B 0.9900
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
O3 H3 O1 0.84 1.76 2.5746(11) 163.1 3_656
O5 H5 O2 0.84 1.73 2.5256(10) 157.9 3_666
N1 H1A O2 0.99 1.84 2.7878(12) 158.7 4_665
N1 H1B O1 0.99 1.81 2.7587(13) 160.6 4_565
C6 H6B O4 0.99 2.50 3.0780(12) 116.6 .
