#------------------------------------------------------------------------------
#$Date: 2019-10-31 02:35:14 +0200 (Thu, 31 Oct 2019) $
#$Revision: 220572 $
#$URL: file:///home/coder/svn-repositories/cod/cif/8/00/03/8000315.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_8000315
loop_
_publ_author_name
'Malaspina, Lorraine A.'
'Wieduwilt, Erna K.'
'Bergmann, Justin'
'Kleemiss, Florian'
'Meyer, Benjamin'
'Ruiz-López, Manuel F'
'Pal, Rumpa'
'Hupf, Emanuel'
'Beckmann, Jens'
'Piltz, Ross O.'
'Edwards, Alison J.'
'Grabowsky, Simon'
'Genoni, Alessandro'
_publ_section_title
;
 Fast and Accurate Quantum Crystallography: From Small to Large, from
 Light to Heavy.
;
_journal_name_full               'The journal of physical chemistry letters'
_journal_page_first              6973
_journal_page_last               6982
_journal_paper_doi               10.1021/acs.jpclett.9b02646
_journal_year                    2019
_chemical_absolute_configuration syn
_chemical_formula_moiety         'C3 H7 N O2'
_chemical_formula_sum            'C3 H7 N O2'
_chemical_formula_weight         89.0947
_chemical_name_common            L-Alanine
_space_group_IT_number           19
_space_group_name_Hall           'P 2ac 2ab'
_space_group_name_H-M_alt        'P 21 21 21'
_symmetry_cell_setting           orthorhombic
_symmetry_Int_Tables_number      19
_symmetry_space_group_name_Hall  'P 2ac 2ab'
_symmetry_space_group_name_H-M   'P 21 21 21'
_atom_sites_solution_hydrogens   difmap
_audit_creation_date             2018-12-19T12:54:52-00:00
_audit_creation_method           'WinGX routine CIF_UPDATE'
_cell_angle_alpha                90
_cell_angle_beta                 90
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   5.9596(2)
_cell_length_b                   12.2828(3)
_cell_length_c                   5.78990(10)
_cell_measurement_reflns_used    9882
_cell_measurement_temperature    150(2)
_cell_measurement_theta_max      72.48
_cell_measurement_theta_min      3.32
_cell_measurement_wavelength     0.71073
_cell_volume                     423.824(19)
_computing_cell_refinement       'SAINT V8.37A integration software'
_computing_data_collection       'Bruker APEX2 software'
_computing_data_reduction        'SORTAV (Blessing, 1995)'
_computing_publication_material  'WinGX publication routines (Farrugia, 2012)'
_computing_structure_refinement
'Tonto 18.12.17 github v. 2b3dd9c (Capelli, 2014)'
_diffrn_ambient_temperature      150(2)
_diffrn_detector                 'APEX-II CCD'
_diffrn_measured_fraction_theta_full 0.998
_diffrn_measured_fraction_theta_max 0.999
_diffrn_measurement_device       'κ-geometry diffractometer'
_diffrn_measurement_device_type  'Bruker APEX-II'
_diffrn_measurement_method       'φ or ω oscillation scans'
_diffrn_orient_matrix_UB_11      0.155495
_diffrn_orient_matrix_UB_12      -0.042187
_diffrn_orient_matrix_UB_13      0.028926
_diffrn_orient_matrix_UB_21      0.030606
_diffrn_orient_matrix_UB_22      0.160634
_diffrn_orient_matrix_UB_23      0.018594
_diffrn_orient_matrix_UB_31      -0.068662
_diffrn_orient_matrix_UB_32      -0.023937
_diffrn_orient_matrix_UB_33      0.073796
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0402
_diffrn_reflns_av_unetI/netI     0.0212
_diffrn_reflns_Laue_measured_fraction_full 0.998
_diffrn_reflns_Laue_measured_fraction_max 0.999
_diffrn_reflns_limit_h_max       10
_diffrn_reflns_limit_h_min       -10
_diffrn_reflns_limit_k_max       22
_diffrn_reflns_limit_k_min       -21
_diffrn_reflns_limit_l_max       10
_diffrn_reflns_limit_l_min       -10
_diffrn_reflns_number            21264
_diffrn_reflns_point_group_measured_fraction_full 0.999
_diffrn_reflns_point_group_measured_fraction_max 1
_diffrn_reflns_theta_full        25.242
_diffrn_reflns_theta_max         40.238
_diffrn_reflns_theta_min         3.317
_diffrn_source                   'sealed x-ray tube'
_diffrn_standards_number         0
_exptl_absorpt_coefficient_mu    0.117
_exptl_absorpt_correction_T_max  0.754
_exptl_absorpt_correction_T_min  0.631
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
SADABS-2016/2 - Bruker AXS area detector scaling and absorption correction
;
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.396
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       block
_exptl_crystal_F_000             192
_exptl_crystal_size_max          0.294
_exptl_crystal_size_mid          0.208
_exptl_crystal_size_min          0.194
_refine_diff_density_max         0.2958
_refine_diff_density_min         -0.2022
_refine_diff_density_rms         0.0377
_refine_ls_abs_structure_details
;
 Flack x determined using 1060 quotients [(I+)-(I-)]/[(I+)+(I-)]
 (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
;
_refine_ls_abs_structure_Flack   -0.1(3)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_all   2.6228
_refine_ls_goodness_of_fit_gt    2.6228
_refine_ls_goodness_of_fit_ref   1.106
_refine_ls_hydrogen_treatment    refxyz,refU
_refine_ls_matrix_type           full
_refine_ls_number_constraints    35
_refine_ls_number_parameters     83
_refine_ls_number_reflns         2602
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.106
_refine_ls_R_factor_all          0.0279
_refine_ls_R_factor_gt           0.0279
_refine_ls_shift/su_max          0
_refine_ls_shift/su_mean         0
_refine_ls_structure_factor_coef F
_refine_ls_weighting_details     w=1/σ(F)
_refine_ls_weighting_scheme      sigma
_refine_ls_wR_factor_all         0.033
_refine_ls_wR_factor_gt          0.033
_refine_ls_wR_factor_ref         0.0739
_reflns_Friedel_coverage         0.716
_reflns_Friedel_fraction_full    1
_reflns_Friedel_fraction_max     1
_reflns_number_gt                2602
_reflns_number_total             2602
_reflns_threshold_expression     'F>0 & F/u(F)>3.0 & |F_calc|>10^-3'
_iucr_refine_instructions_details
;
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!!                                                                         !!!
!!!                        This stdin was written with lamaGOET             !!!
!!!                                                                         !!!
!!!                    script written by Lorraine Andrade Malaspina         !!!
!!!                        contact: lorraine.malaspina@gmail.com            !!!
!!!                                                                         !!!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
{ 

   keyword_echo_on

   name= L-Ala_150K_tonto_IAM

   ! Process the CIF
   CIF= {
       file_name= ccdc_deposit.cif
    }

   process_CIF

   name= L-Ala_150K_tonto_IAM

   crystal= {
      xray_data= {
         optimise_extinction= NO
         correct_dispersion=  FALSE
         wavelength= 0.71073 Angstrom
         REDIRECT tonto.data.hkl
         f_sigma_cutoff= 3
         refine_H_U_iso= YES

         show_fit_output= TRUE
         show_fit_results= TRUE
      }

   }
   
   set_isotropic_h_adps 

   put

   ! Refine atoms with invarioms
   IAM_refinement

}
;
_cod_data_source_file            L-Ala_150K.cif
_cod_data_source_block           L-Ala_150K_tonto_IAM
_cod_depositor_comments
;
The following automatic conversions were performed:

'_symmetry_cell_setting' value 'Orthorhombic' changed to
'orthorhombic' according to
/home/data/users/saulius/crontab/automatic-downloads/rss-feeds/ACS/lib/dictionaries/cif_core.dic
dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26.

Automatic conversion script
Id: cif_fix_values 4973 2017-02-22 13:04:09Z antanas 
;
_cod_original_sg_symbol_Hall     'p 2ac 2ab'
_cod_original_sg_symbol_H-M      'p 21 21 21'
_cod_database_code               8000315
_shelx_estimated_absorpt_t_min   0.967
_shelx_estimated_absorpt_t_max   0.978
_refine_ls_coordinate_system     cartesian
_refine_ls_svd_threshold         0.1E-02
loop_
_symmetry_equiv_pos_as_xyz
'+x, +y, +z'
'-x+1/2, -y, +z+1/2'
'+x+1/2, -y+1/2, -z'
'-x, +y+1/2, -z+1/2'
loop_
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_disorder_group
N1 0.65002(8) 0.63772(4) 0.18394(7) 0.01204(14) Uani 1 0
H1 0.6964(19) 0.5669(11) 0.193(2) 0.038(3) Uiso 1 0
H2 0.7697(16) 0.6832(8) 0.2052(18) 0.017(2) Uiso 1 0
H3 0.5877(17) 0.6476(10) 0.028(2) 0.033(3) Uiso 1 0
C1 0.46951(8) 0.66124(4) 0.35507(7) 0.01081(15) Uani 1 0
H4 0.4317(16) 0.7381(8) 0.3433(18) 0.016(2) Uiso 1 0
C2 0.26510(10) 0.59096(5) 0.30339(10) 0.01662(19) Uani 1 0
H5 0.2085(17) 0.6078(9) 0.150(2) 0.029(3) Uiso 1 0
H6 0.1480(16) 0.6050(8) 0.415(2) 0.026(3) Uiso 1 0
H7 0.3089(16) 0.5099(10) 0.305(2) 0.028(3) Uiso 1 0
C3 0.55624(8) 0.64101(4) 0.60053(7) 0.01070(15) Uani 1 0
O1 0.72765(7) 0.58382(3) 0.62552(7) 0.01596(16) Uani 1 0
O2 0.44422(7) 0.68445(3) 0.76135(7) 0.01584(15) Uani 1 0
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_23
_atom_site_aniso_U_13
_atom_site_aniso_U_12
N1 0.01467(16) 0.01362(15) 0.00783(13) -0.00006(12) 0.00060(12) 0.00097(13)
C1 0.01391(17) 0.01145(14) 0.00707(14) -0.00004(11) -0.00037(12) 0.00143(13)
C2 0.01602(19) 0.0213(2) 0.01253(18) -0.00070(16) -0.00160(15) -0.00329(17)
C3 0.01469(17) 0.00983(14) 0.00757(13) 0.00024(11) -0.00119(13) -0.00025(14)
O1 0.01870(17) 0.01645(15) 0.01274(15) 0.00132(12) -0.00222(12) 0.00596(13)
O2 0.02113(18) 0.01868(15) 0.00770(12) -0.00137(11) 0.00108(13) 0.00468(14)
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.006 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_exptl_crystal_face_index_h
_exptl_crystal_face_index_k
_exptl_crystal_face_index_l
_exptl_crystal_face_perp_dist
-2 -1 2 0.118
2 1 -2 0.107
2 1 -1 0.093
2 1 0 0.092
2 1 1 0.092
-2 -1 -1 0.105
-2 -1 0 0.104
-2 -1 -2 0.109
2 1 2 0.103
0 0 1 0.147
0 0 -1 0.139
1 0 2 0.121
-1 0 -2 0.111
-1 0 -1 0.107
1 0 1 0.103
-2 0 -1 0.109
2 0 1 0.095
1 0 0 0.088
-2 0 1 0.12
2 0 -1 0.099
-1 0 1 0.128
1 0 -1 0.11
1 0 -2 0.126
-2 1 -2 0.109
2 -1 2 0.089
-2 1 -1 0.105
-2 1 0 0.11
2 -1 0 0.09
1 -1 2 0.097
-1 1 -2 0.113
-2 1 2 0.13
2 -1 -2 0.106
-1 1 -1 0.105
1 -1 1 0.085
-2 2 -1 0.106
-1 1 0 0.107
1 -1 0 0.087
-2 2 1 0.114
-1 2 -2 0.104
1 -2 2 0.077
1 -1 -1 0.097
-1 1 1 0.12
1 -2 1 0.079
-1 2 -1 0.097
-1 2 0 0.097
1 -2 0 0.08
1 -1 -2 0.111
-1 1 2 0.138
0 1 -2 0.126
0 -1 2 0.093
1 -2 -2 0.103
-1 2 2 0.12
0 1 -1 0.109
0 -1 1 0.074
0 -2 1 0.065
0 2 -1 0.101
0 1 0 0.097
0 -1 0 0.078
0 -2 -1 0.091
0 2 1 0.102
0 -1 -1 0.102
0 1 1 0.12
-1 -2 2 0.079
0 -1 -2 0.124
-1 -2 1 0.078
-1 -2 0 0.081
-1 -2 -1 0.089
-1 -2 -2 0.094
-1 -1 2 0.108
-1 -1 1 0.098
-4 1 9 0.145
-1 1 3 0.147
2 1 9 0.14
5 2 -9 0.125
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_publ_flag
O1 C3 O2 125.77(4) yes
O1 C3 C1 118.34(4) yes
O2 C3 C1 115.89(4) yes
N1 C1 C2 109.68(4) yes
N1 C1 C3 109.97(4) yes
N1 C1 H4 108.0(6) yes
C1 N1 H1 111.4(8) yes
C1 N1 H2 110.8(6) yes
C1 N1 H3 108.3(6) yes
C2 C1 C3 111.11(4) yes
C1 C2 H5 109.7(6) yes
C1 C2 H6 110.2(6) yes
C1 C2 H7 110.1(5) yes
C2 C1 H4 110.5(6) yes
C3 C1 H4 107.5(6) yes
H1 N1 H2 109.7(9) yes
H1 N1 H3 106.4(10) yes
H2 N1 H3 110.1(9) yes
H5 C2 H6 108.8(8) yes
H5 C2 H7 107.6(9) yes
H6 C2 H7 110.5(9) yes
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_publ_flag
O1 C3 1.2482(6) yes
O2 C3 1.2638(6) yes
N1 C1 1.4908(6) yes
N1 H1 0.914(13) yes
N1 H2 0.914(10) yes
N1 H3 0.985(11) yes
C1 C2 1.5227(7) yes
C1 C3 1.5325(6) yes
C1 H4 0.972(10) yes
C2 H5 0.974(11) yes
C2 H6 0.966(11) yes
C2 H7 1.029(12) yes
