#------------------------------------------------------------------------------ #$Date: 2016-01-05 06:11:08 +0200 (Tue, 05 Jan 2016) $ #$Revision: 173488 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/54/18/1541883.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1541883 loop_ _publ_author_name 'Guo, Jing' 'Liu, Yangbin' 'Li, Xiangqiang' 'Liu, Xiaohua' 'Lin, Lili' 'Feng, Xiaoming' _publ_section_title ; Nickel(II)-Catalyzed Enantioselective Cyclopropanation of 3-Alkenyl-Oxindoles with Phenyliodonium Ylide via Free Carbene ; _journal_name_full 'Chem. Sci.' _journal_paper_doi 10.1039/C5SC03658E _journal_year 2016 _chemical_absolute_configuration ad _chemical_formula_sum 'C14 H22 O4' _chemical_formula_weight 254.32 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2014-11-15 deposited with the CCDC. 2016-01-04 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.2942(11) _cell_length_b 12.3961(18) _cell_length_c 13.909(2) _cell_measurement_reflns_used 4753 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 55.021 _cell_measurement_theta_min 5.585 _cell_volume 1257.6(3) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker APEX2' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 173(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0250 _diffrn_reflns_av_sigmaI/netI 0.0233 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 8860 _diffrn_reflns_theta_full 25.98 _diffrn_reflns_theta_max 25.98 _diffrn_reflns_theta_min 2.20 _exptl_absorpt_coefficient_mu 0.097 _exptl_absorpt_correction_T_max 0.7456 _exptl_absorpt_correction_T_min 0.6926 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details sadabs _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.343 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 552 _exptl_crystal_size_max 0.211 _exptl_crystal_size_mid 0.175 _exptl_crystal_size_min 0.134 _refine_diff_density_max 0.208 _refine_diff_density_min -0.159 _refine_diff_density_rms 0.034 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.9(9) _refine_ls_extinction_coef 0.0058(14) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.024 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 168 _refine_ls_number_reflns 2462 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.024 _refine_ls_R_factor_all 0.0328 _refine_ls_R_factor_gt 0.0308 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0308P)^2^+0.3738P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0738 _refine_ls_wR_factor_ref 0.0751 _reflns_number_gt 2353 _reflns_number_total 2462 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c5sc03658e2.cif _cod_data_source_block dm13746 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 4268 2015-11-12 08:31:59Z antanas ; _cod_original_cell_volume 1257.7(3) _cod_original_sg_symbol_H-M P2(1)2(1)2(1) _cod_database_code 1541883 _audit_block_doi 10.5517/cc13qf4d loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O 0.01251(15) 0.73152(10) 0.71028(9) 0.0403(3) Uani 1 1 d . O2 O 0.21535(15) 0.59594(9) 0.60163(7) 0.0278(2) Uani 1 1 d . O3 O 0.28628(14) 0.69672(8) 0.56148(7) 0.0273(2) Uani 1 1 d . O4 O 0.54864(17) 0.59571(9) 0.43335(7) 0.0319(3) Uani 1 1 d . H4 H 0.5645 0.6545 0.4044 0.048 Uiso 1 1 calc R C1 C 0.1176(2) 0.67407(12) 0.75405(11) 0.0262(3) Uani 1 1 d . C2 C 0.1374(2) 0.67841(13) 0.86117(11) 0.0313(4) Uani 1 1 d . H2A H 0.0920 0.6103 0.8897 0.038 Uiso 1 1 calc R H2B H 0.0629 0.7385 0.8871 0.038 Uiso 1 1 calc R C3 C 0.3377(2) 0.69486(12) 0.88818(10) 0.0272(3) Uani 1 1 d . H3A H 0.3483 0.6939 0.9591 0.033 Uiso 1 1 calc R H3B H 0.3767 0.7671 0.8658 0.033 Uiso 1 1 calc R C4 C 0.4694(2) 0.61031(11) 0.84644(10) 0.0217(3) Uani 1 1 d . C5 C 0.44405(19) 0.60181(11) 0.73365(9) 0.0183(3) Uani 1 1 d . C6 C 0.23648(19) 0.58965(11) 0.70403(9) 0.0215(3) Uani 1 1 d . C7 C 0.51328(19) 0.70584(11) 0.68506(10) 0.0211(3) Uani 1 1 d . H7A H 0.4489 0.7690 0.7126 0.025 Uiso 1 1 calc R H7B H 0.6462 0.7145 0.6973 0.025 Uiso 1 1 calc R C8 C 0.47891(19) 0.70062(11) 0.57778(10) 0.0215(3) Uani 1 1 d . H8 H 0.5248 0.7697 0.5494 0.026 Uiso 1 1 calc R C9 C 0.5888(2) 0.60937(12) 0.53241(10) 0.0242(3) Uani 1 1 d . H9 H 0.7217 0.6281 0.5381 0.029 Uiso 1 1 calc R C10 C 0.5597(2) 0.50080(11) 0.58154(11) 0.0285(3) Uani 1 1 d . H10A H 0.6578 0.4506 0.5612 0.034 Uiso 1 1 calc R H10B H 0.4410 0.4702 0.5604 0.034 Uiso 1 1 calc R C11 C 0.5605(2) 0.50931(11) 0.69156(10) 0.0248(3) Uani 1 1 d . H11A H 0.6887 0.5188 0.7133 0.030 Uiso 1 1 calc R H11B H 0.5154 0.4403 0.7185 0.030 Uiso 1 1 calc R C12 C 0.1472(2) 0.47902(13) 0.72097(12) 0.0328(4) Uani 1 1 d . H12A H 0.0280 0.4766 0.6886 0.049 Uiso 1 1 calc R H12B H 0.1300 0.4676 0.7901 0.049 Uiso 1 1 calc R H12C H 0.2267 0.4223 0.6950 0.049 Uiso 1 1 calc R C13 C 0.4421(2) 0.50249(12) 0.89902(11) 0.0297(3) Uani 1 1 d . H13A H 0.5312 0.4497 0.8752 0.045 Uiso 1 1 calc R H13B H 0.3176 0.4759 0.8872 0.045 Uiso 1 1 calc R H13C H 0.4600 0.5131 0.9682 0.045 Uiso 1 1 calc R C14 C 0.6639(2) 0.64747(14) 0.87230(11) 0.0321(4) Uani 1 1 d . H14A H 0.6759 0.6520 0.9424 0.048 Uiso 1 1 calc R H14B H 0.6868 0.7186 0.8439 0.048 Uiso 1 1 calc R H14C H 0.7531 0.5955 0.8472 0.048 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0315(6) 0.0540(7) 0.0354(6) 0.0156(6) 0.0051(5) 0.0158(6) O2 0.0303(5) 0.0344(6) 0.0189(5) 0.0029(4) -0.0028(4) -0.0093(5) O3 0.0288(5) 0.0312(6) 0.0219(5) 0.0094(4) -0.0013(4) 0.0029(5) O4 0.0497(7) 0.0295(5) 0.0163(5) 0.0013(4) 0.0044(5) -0.0026(5) C1 0.0201(7) 0.0314(7) 0.0270(8) 0.0062(6) 0.0027(6) 0.0001(6) C2 0.0293(8) 0.0391(8) 0.0257(8) -0.0005(7) 0.0054(6) 0.0096(7) C3 0.0350(8) 0.0278(8) 0.0188(7) -0.0029(6) 0.0003(6) 0.0005(7) C4 0.0229(7) 0.0245(7) 0.0176(6) 0.0022(6) -0.0007(5) 0.0001(6) C5 0.0209(6) 0.0181(6) 0.0161(6) 0.0018(5) -0.0001(5) -0.0008(5) C6 0.0246(7) 0.0245(7) 0.0155(6) 0.0014(5) -0.0002(5) -0.0026(6) C7 0.0239(7) 0.0179(7) 0.0216(7) 0.0005(5) 0.0019(5) -0.0020(5) C8 0.0256(7) 0.0191(7) 0.0199(7) 0.0036(5) 0.0009(6) -0.0020(6) C9 0.0292(8) 0.0243(7) 0.0192(7) 0.0013(6) 0.0037(6) 0.0001(6) C10 0.0413(9) 0.0197(7) 0.0245(7) -0.0002(6) 0.0092(6) 0.0054(7) C11 0.0309(8) 0.0215(7) 0.0220(7) 0.0044(6) 0.0047(6) 0.0057(6) C12 0.0363(9) 0.0347(8) 0.0274(8) -0.0001(7) -0.0005(7) -0.0136(7) C13 0.0371(9) 0.0312(8) 0.0208(7) 0.0077(6) 0.0009(6) 0.0015(7) C14 0.0295(8) 0.0450(9) 0.0217(8) 0.0030(7) -0.0067(6) -0.0046(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _citation_id _citation_doi _citation_year 1 10.1021/ol503603t 2015 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C6 O2 O3 112.79(10) C8 O3 O2 108.49(10) C9 O4 H4 109.5 O1 C1 C2 122.71(14) O1 C1 C6 122.26(13) C2 C1 C6 115.01(12) C1 C2 C3 110.07(13) C1 C2 H2A 109.6 C3 C2 H2A 109.6 C1 C2 H2B 109.6 C3 C2 H2B 109.6 H2A C2 H2B 108.2 C2 C3 C4 114.55(12) C2 C3 H3A 108.6 C4 C3 H3A 108.6 C2 C3 H3B 108.6 C4 C3 H3B 108.6 H3A C3 H3B 107.6 C3 C4 C14 106.55(12) C3 C4 C13 109.43(12) C14 C4 C13 105.64(12) C3 C4 C5 110.30(11) C14 C4 C5 111.12(12) C13 C4 C5 113.49(12) C7 C5 C11 105.97(11) C7 C5 C4 109.92(11) C11 C5 C4 111.18(11) C7 C5 C6 106.27(11) C11 C5 C6 111.01(11) C4 C5 C6 112.18(11) O2 C6 C1 110.73(11) O2 C6 C12 98.93(11) C1 C6 C12 107.53(12) O2 C6 C5 110.94(11) C1 C6 C5 111.16(11) C12 C6 C5 116.90(12) C8 C7 C5 110.01(11) C8 C7 H7A 109.7 C5 C7 H7A 109.7 C8 C7 H7B 109.7 C5 C7 H7B 109.7 H7A C7 H7B 108.2 O3 C8 C7 108.76(11) O3 C8 C9 115.35(12) C7 C8 C9 110.66(11) O3 C8 H8 107.2 C7 C8 H8 107.2 C9 C8 H8 107.2 O4 C9 C8 112.47(12) O4 C9 C10 107.54(12) C8 C9 C10 113.36(11) O4 C9 H9 107.7 C8 C9 H9 107.7 C10 C9 H9 107.7 C9 C10 C11 112.71(12) C9 C10 H10A 109.0 C11 C10 H10A 109.0 C9 C10 H10B 109.0 C11 C10 H10B 109.0 H10A C10 H10B 107.8 C10 C11 C5 115.32(11) C10 C11 H11A 108.4 C5 C11 H11A 108.4 C10 C11 H11B 108.4 C5 C11 H11B 108.4 H11A C11 H11B 107.5 C6 C12 H12A 109.5 C6 C12 H12B 109.5 H12A C12 H12B 109.5 C6 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 C4 C13 H13A 109.5 C4 C13 H13B 109.5 H13A C13 H13B 109.5 C4 C13 H13C 109.5 H13A C13 H13C 109.5 H13B C13 H13C 109.5 C4 C14 H14A 109.5 C4 C14 H14B 109.5 H14A C14 H14B 109.5 C4 C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.2104(19) O2 C6 1.4348(16) O2 O3 1.4630(14) O3 C8 1.4240(18) O4 C9 1.4187(17) O4 H4 0.8400 C1 C2 1.498(2) C1 C6 1.527(2) C2 C3 1.522(2) C2 H2A 0.9900 C2 H2B 0.9900 C3 C4 1.536(2) C3 H3A 0.9900 C3 H3B 0.9900 C4 C14 1.534(2) C4 C13 1.537(2) C4 C5 1.5832(18) C5 C7 1.5410(18) C5 C11 1.5423(19) C5 C6 1.5763(19) C6 C12 1.536(2) C7 C8 1.5145(19) C7 H7A 0.9900 C7 H7B 0.9900 C8 C9 1.5233(19) C8 H8 1.0000 C9 C10 1.5243(19) C9 H9 1.0000 C10 C11 1.534(2) C10 H10A 0.9900 C10 H10B 0.9900 C11 H11A 0.9900 C11 H11B 0.9900 C12 H12A 0.9800 C12 H12B 0.9800 C12 H12C 0.9800 C13 H13A 0.9800 C13 H13B 0.9800 C13 H13C 0.9800 C14 H14A 0.9800 C14 H14B 0.9800 C14 H14C 0.9800 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O4 H4 O3 0.84 2.50 3.1032(16) 129.6 4_566 O4 H4 O1 0.84 2.16 2.9406(16) 153.5 4_566 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 O2 O3 C8 63.88(13) O1 C1 C2 C3 -126.26(16) C6 C1 C2 C3 55.18(18) C1 C2 C3 C4 -55.61(18) C2 C3 C4 C14 174.01(13) C2 C3 C4 C13 -72.22(16) C2 C3 C4 C5 53.31(16) C3 C4 C5 C7 68.82(15) C14 C4 C5 C7 -49.11(15) C13 C4 C5 C7 -167.99(12) C3 C4 C5 C11 -174.16(11) C14 C4 C5 C11 67.91(15) C13 C4 C5 C11 -50.97(16) C3 C4 C5 C6 -49.18(15) C14 C4 C5 C6 -167.11(12) C13 C4 C5 C6 74.01(15) O3 O2 C6 C1 66.23(14) O3 O2 C6 C12 178.89(10) O3 O2 C6 C5 -57.71(14) O1 C1 C6 O2 4.7(2) C2 C1 C6 O2 -176.78(12) O1 C1 C6 C12 -102.41(17) C2 C1 C6 C12 76.16(16) O1 C1 C6 C5 128.46(15) C2 C1 C6 C5 -52.97(17) C7 C5 C6 O2 52.50(14) C11 C5 C6 O2 -62.29(14) C4 C5 C6 O2 172.65(11) C7 C5 C6 C1 -71.19(13) C11 C5 C6 C1 174.03(11) C4 C5 C6 C1 48.96(15) C7 C5 C6 C12 164.86(12) C11 C5 C6 C12 50.07(16) C4 C5 C6 C12 -74.99(15) C11 C5 C7 C8 63.10(14) C4 C5 C7 C8 -176.67(11) C6 C5 C7 C8 -55.07(14) O2 O3 C8 C7 -64.75(13) O2 O3 C8 C9 60.22(14) C5 C7 C8 O3 63.86(14) C5 C7 C8 C9 -63.82(14) O3 C8 C9 O4 50.96(16) C7 C8 C9 O4 174.94(12) O3 C8 C9 C10 -71.31(16) C7 C8 C9 C10 52.67(17) O4 C9 C10 C11 -168.35(13) C8 C9 C10 C11 -43.38(18) C9 C10 C11 C5 46.44(19) C7 C5 C11 C10 -55.16(16) C4 C5 C11 C10 -174.56(13) C6 C5 C11 C10 59.81(16)