#------------------------------------------------------------------------------ #$Date: 2020-04-21 02:02:28 +0300 (Tue, 21 Apr 2020) $ #$Revision: 250959 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/55/78/1557831.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1557831 loop_ _publ_author_name 'Sessler, Jonathan L.' 'Guo, Chenxing' 'Wang, Hu' 'Lynch, Vincent' 'Ji, Xiaofan' 'Page, Zachariah A.' _publ_section_title ; Molecular recognition of pyrazine N,N’-dioxide using aryl extended calix[4]pyrroles ; _journal_name_full 'Chemical Science' _journal_paper_doi 10.1039/D0SC01496F _journal_year 2020 _chemical_formula_moiety 'C4 H4 N2 O2' _chemical_formula_sum 'C4 H4 N2 O2' _chemical_formula_weight 112.09 _space_group_crystal_system orthorhombic _space_group_IT_number 62 _space_group_name_Hall '-P 2ac 2n' _space_group_name_H-M_alt 'P n m a' _atom_sites_solution_hydrogens geom _audit_creation_method SHELXL-2016/6 _audit_update_record ; 2020-02-20 deposited with the CCDC. 2020-04-20 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 8 _cell_length_a 11.866(3) _cell_length_b 11.883(3) _cell_length_c 6.3933(15) _cell_measurement_reflns_used 708 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 24.3 _cell_measurement_theta_min 3.43 _cell_volume 901.5(4) _computing_cell_refinement 'Apex II release 2010, Bruker AXS, Inc.' _computing_data_collection 'Apex II release 2010, Bruker AXS, Inc.' _computing_data_reduction 'Apex II release 2010, Bruker AXS, Inc.' _computing_molecular_graphics 'XP SHELXTL/PC, Siemens Analytical' _computing_publication_material 'SHELXL-2016/6, Sheldrick, G. M.' _computing_structure_refinement 'Shelxl-2016/6, Sheldrick, G. M.' _computing_structure_solution ; Sheldrick, G. M. (2015). SHELXT. Acta Cryst. A71, 3-8. ; _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Nonius Kappa CCD with a Bruker Apex II CCD' _diffrn_measurement_method \w-scans _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0699 _diffrn_reflns_av_unetI/netI 0.0704 _diffrn_reflns_Laue_measured_fraction_full 1.000 _diffrn_reflns_Laue_measured_fraction_max 0.997 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 8 _diffrn_reflns_limit_l_min -8 _diffrn_reflns_number 6876 _diffrn_reflns_point_group_measured_fraction_full 1.000 _diffrn_reflns_point_group_measured_fraction_max 0.997 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 28.332 _diffrn_reflns_theta_min 3.429 _diffrn_source 'fine focus sealed tube' _exptl_absorpt_coefficient_mu 0.136 _exptl_absorpt_correction_T_max 1.00 _exptl_absorpt_correction_T_min 0.823 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; SADABS. G. M. Sheldrick ; _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.652 _exptl_crystal_description needle _exptl_crystal_F_000 464 _exptl_crystal_size_max 0.430 _exptl_crystal_size_mid 0.160 _exptl_crystal_size_min 0.070 _refine_diff_density_max 0.258 _refine_diff_density_min -0.344 _refine_diff_density_rms 0.063 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.041 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 85 _refine_ls_number_reflns 1170 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.041 _refine_ls_R_factor_all 0.0860 _refine_ls_R_factor_gt 0.0448 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0236P)^2^+0.4229P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0951 _refine_ls_wR_factor_ref 0.1108 _reflns_Friedel_coverage 0.000 _reflns_number_gt 709 _reflns_number_total 1170 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file d0sc01496f3.cif _cod_data_source_block shelx_CCDC3 _cod_original_cell_volume 901.4(4) _cod_database_code 1557831 _shelx_shelxl_version_number 2016/6 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_min 0.944 _shelx_estimated_absorpt_t_max 0.991 _shelx_res_file ; TITL shelxt_a.res in Pnma colorless needle shelx.res created by SHELXL-2016/6 at 16:48:13 on 11-Apr-2019 rem isor .01 0.02 CELL 0.71073 11.8658 11.8827 6.3933 90 90 90 ZERR 8 0.0027 0.0027 0.0015 0 0 0 LATT 1 SYMM 0.5-X,-Y,0.5+Z SYMM -X,0.5+Y,-Z SYMM 0.5+X,0.5-Y,0.5-Z SFAC C H N O UNIT 32 32 16 16 L.S. 10 PLAN 20 TEMP -173 BOND $H CONF size .43 .16 .07 LIST 4 fmap 2 acta MERG 2 REM REM REM WGHT 0.023600 0.422900 FVAR 0.10222 C1 1 0.482641 0.250000 0.495120 10.50000 0.00966 0.01571 = 0.01332 0.00000 -0.00179 0.00000 AFIX 43 H1 2 0.562159 0.250000 0.512414 10.50000 -1.20000 AFIX 0 C2 1 0.415155 0.250000 0.666205 10.50000 0.01536 0.01612 = 0.01174 0.00000 -0.00208 0.00000 AFIX 43 H2 2 0.447862 0.250000 0.801833 10.50000 -1.20000 AFIX 0 C3 1 0.256267 0.250000 0.449989 10.50000 0.01362 0.01794 = 0.01102 0.00000 -0.00161 0.00000 AFIX 43 H3 2 0.176749 0.250000 0.432697 10.50000 -1.20000 AFIX 0 C4 1 0.324279 0.250000 0.278573 10.50000 0.01125 0.01549 = 0.01112 0.00000 -0.00214 0.00000 AFIX 43 H4 2 0.291689 0.250000 0.142848 10.50000 -1.20000 AFIX 0 C5 1 0.612520 0.491009 -0.023949 11.00000 0.01268 0.01364 = 0.01388 0.00187 0.00237 0.00110 AFIX 43 H5 2 0.691768 0.485515 -0.042456 11.00000 -1.20000 AFIX 0 C6 1 0.544210 0.494125 -0.194230 11.00000 0.01273 0.01441 = 0.01176 0.00065 0.00335 -0.00020 AFIX 43 H6 2 0.576077 0.489089 -0.330224 11.00000 -1.20000 AFIX 0 N1 3 0.438194 0.250000 0.299275 10.50000 0.01171 0.01352 = 0.00813 0.00000 0.00184 0.00000 N2 3 0.300997 0.250000 0.645548 10.50000 0.01093 0.02089 = 0.00932 0.00000 0.00162 0.00000 N3 3 0.569201 0.495632 0.172277 11.00000 0.01178 0.01547 = 0.01099 0.00061 -0.00276 -0.00128 O1 4 0.502472 0.250000 0.134401 10.50000 0.01484 0.02312 = 0.00823 0.00000 0.00477 0.00000 O2 4 0.235860 0.250000 0.807615 10.50000 0.01867 0.04958 = 0.00826 0.00000 0.00658 0.00000 O3 4 0.634360 0.489075 0.335214 11.00000 0.01415 0.03245 = 0.00955 0.00087 -0.00541 0.00042 HKLF 4 REM shelxt_a.res in Pnma colorless needle REM R1 = 0.0448 for 709 Fo > 4sig(Fo) and 0.0860 for all 1170 data REM 85 parameters refined using 0 restraints END WGHT 0.0236 0.4229 REM Highest difference peak 0.258, deepest hole -0.344, 1-sigma level 0.063 Q1 1 0.5816 0.2500 0.1420 10.50000 0.05 0.26 Q2 1 0.4419 0.2910 0.5572 11.00000 0.05 0.24 Q3 1 0.3705 0.2500 0.6579 10.50000 0.05 0.19 Q4 1 0.5989 0.5122 0.0744 11.00000 0.05 0.19 Q5 1 0.6581 0.5786 0.3891 11.00000 0.05 0.19 Q6 1 0.2763 0.2500 0.5485 10.50000 0.05 0.18 Q7 1 0.6405 0.4186 0.3456 11.00000 0.05 0.18 Q8 1 0.4880 0.4589 -0.1863 11.00000 0.05 0.17 Q9 1 0.4385 0.2967 0.7306 11.00000 0.05 0.17 Q10 1 0.2044 0.3012 0.0501 11.00000 0.05 0.17 Q11 1 0.5785 0.2660 0.4263 11.00000 0.05 0.17 Q12 1 0.3824 0.2759 0.2889 11.00000 0.05 0.16 Q13 1 0.5704 0.4539 -0.1023 11.00000 0.05 0.16 Q14 1 0.5983 0.5299 0.4415 11.00000 0.05 0.16 Q15 1 0.7406 0.4470 0.0267 11.00000 0.05 0.16 Q16 1 0.4953 0.5203 -0.1630 11.00000 0.05 0.15 Q17 1 0.4631 0.2934 0.3997 11.00000 0.05 0.15 Q18 1 0.2614 0.2500 0.9475 10.50000 0.05 0.15 Q19 1 0.5782 0.5848 -0.4691 11.00000 0.05 0.15 Q20 1 0.5655 0.4345 0.3353 11.00000 0.05 0.15 ; _shelx_res_checksum 44778 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z' 'x+1/2, -y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'x, -y-1/2, z' '-x-1/2, y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group C1 C 0.4826(2) 0.250000 0.4951(4) 0.0129(6) Uani 1 2 d S T P . . H1 H 0.562159 0.250000 0.512414 0.015 Uiso 1 2 calc R U P . . C2 C 0.4152(2) 0.250000 0.6662(4) 0.0144(6) Uani 1 2 d S T P . . H2 H 0.447862 0.250000 0.801833 0.017 Uiso 1 2 calc R U P . . C3 C 0.2563(2) 0.250000 0.4500(4) 0.0142(6) Uani 1 2 d S T P . . H3 H 0.176749 0.250000 0.432697 0.017 Uiso 1 2 calc R U P . . C4 C 0.3243(2) 0.250000 0.2786(4) 0.0126(6) Uani 1 2 d S T P . . H4 H 0.291689 0.250000 0.142848 0.015 Uiso 1 2 calc R U P . . C5 C 0.61252(16) 0.49101(15) -0.0239(3) 0.0134(4) Uani 1 1 d . . . . . H5 H 0.691768 0.485515 -0.042456 0.016 Uiso 1 1 calc R U . . . C6 C 0.54421(15) 0.49413(14) -0.1942(3) 0.0130(4) Uani 1 1 d . . . . . H6 H 0.576077 0.489089 -0.330224 0.016 Uiso 1 1 calc R U . . . N1 N 0.43819(18) 0.250000 0.2993(3) 0.0111(5) Uani 1 2 d S T P . . N2 N 0.30100(18) 0.250000 0.6455(3) 0.0137(5) Uani 1 2 d S T P . . N3 N 0.56920(13) 0.49563(12) 0.1723(2) 0.0127(4) Uani 1 1 d . . . . . O1 O 0.50247(15) 0.250000 0.1344(3) 0.0154(4) Uani 1 2 d S T P . . O2 O 0.23586(16) 0.250000 0.8076(3) 0.0255(5) Uani 1 2 d S T P . . O3 O 0.63436(11) 0.48907(11) 0.3352(2) 0.0187(4) Uani 1 1 d . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0097(13) 0.0157(13) 0.0133(14) 0.000 -0.0018(10) 0.000 C2 0.0154(14) 0.0161(13) 0.0117(13) 0.000 -0.0021(12) 0.000 C3 0.0136(13) 0.0179(13) 0.0110(13) 0.000 -0.0016(11) 0.000 C4 0.0113(13) 0.0155(13) 0.0111(14) 0.000 -0.0021(10) 0.000 C5 0.0127(9) 0.0136(9) 0.0139(10) 0.0019(7) 0.0024(7) 0.0011(7) C6 0.0127(10) 0.0144(9) 0.0118(9) 0.0006(8) 0.0034(8) -0.0002(7) N1 0.0117(11) 0.0135(11) 0.0081(11) 0.000 0.0018(9) 0.000 N2 0.0109(11) 0.0209(12) 0.0093(12) 0.000 0.0016(9) 0.000 N3 0.0118(8) 0.0155(8) 0.0110(8) 0.0006(7) -0.0028(6) -0.0013(6) O1 0.0148(10) 0.0231(10) 0.0082(9) 0.000 0.0048(7) 0.000 O2 0.0187(11) 0.0496(13) 0.0083(11) 0.000 0.0066(8) 0.000 O3 0.0141(8) 0.0324(8) 0.0095(7) 0.0009(6) -0.0054(5) 0.0004(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C2 C1 N1 121.0(2) . . ? C2 C1 H1 119.5 . . ? N1 C1 H1 119.5 . . ? C1 C2 N2 120.6(2) . . ? C1 C2 H2 119.7 . . ? N2 C2 H2 119.7 . . ? N2 C3 C4 120.6(3) . . ? N2 C3 H3 119.7 . . ? C4 C3 H3 119.7 . . ? N1 C4 C3 120.8(2) . . ? N1 C4 H4 119.6 . . ? C3 C4 H4 119.6 . . ? N3 C5 C6 120.94(17) . . ? N3 C5 H5 119.5 . . ? C6 C5 H5 119.5 . . ? C5 C6 N3 120.73(16) . 5_665 ? C5 C6 H6 119.6 . . ? N3 C6 H6 119.6 5_665 . ? O1 N1 C4 120.3(2) . . ? O1 N1 C1 121.3(2) . . ? C4 N1 C1 118.4(2) . . ? O2 N2 C3 120.3(2) . . ? O2 N2 C2 121.2(2) . . ? C3 N2 C2 118.6(2) . . ? O3 N3 C5 120.88(16) . . ? O3 N3 C6 120.79(15) . 5_665 ? C5 N3 C6 118.32(15) . 5_665 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C1 C2 1.356(4) . ? C1 N1 1.359(3) . ? C1 H1 0.9500 . ? C2 N2 1.361(3) . ? C2 H2 0.9500 . ? C3 N2 1.358(3) . ? C3 C4 1.361(4) . ? C3 H3 0.9500 . ? C4 N1 1.358(3) . ? C4 H4 0.9500 . ? C5 N3 1.357(2) . ? C5 C6 1.358(3) . ? C5 H5 0.9500 . ? C6 N3 1.358(2) 5_665 ? C6 H6 0.9500 . ? N1 O1 1.301(3) . ? N2 O2 1.293(3) . ? N3 O3 1.2996(19) . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag N1 C1 C2 N2 0.000(1) . . . . ? N2 C3 C4 N1 0.000(0) . . . . ? N3 C5 C6 N3 1.4(3) . . . 5_665 ? C3 C4 N1 O1 180.000(0) . . . . ? C3 C4 N1 C1 0.000(0) . . . . ? C2 C1 N1 O1 180.000(0) . . . . ? C2 C1 N1 C4 0.000(0) . . . . ? C4 C3 N2 O2 180.000(0) . . . . ? C4 C3 N2 C2 0.000(0) . . . . ? C1 C2 N2 O2 180.000(0) . . . . ? C1 C2 N2 C3 0.000(0) . . . . ? C6 C5 N3 O3 177.81(16) . . . . ? C6 C5 N3 C6 -1.4(3) . . . 5_665 ?