#------------------------------------------------------------------------------ #$Date: 2017-02-17 18:30:16 +0200 (Fri, 17 Feb 2017) $ #$Revision: 192234 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/32/40/4324065.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4324065 loop_ _publ_author_name 'Raymond J. Batchelor' 'Frederick W. B. Einstein' 'Ian D. Gay' 'Jian Gu' 'B. Mario Pinto' 'Xuemin Zhou' _publ_contact_author ; Prof. Frederick W.B. Einstein Department of Chemistry Simon Fraser University Burnaby, British Columbia Canada V5A 1S6 ; _publ_contact_author_email einstein@sfu.ca _publ_contact_author_fax '604 291 3765' _publ_contact_author_phone '604 291 4878' _publ_section_title ; Stereochemical Analysis of Palladium(II) Complexes of the Selenium Coronands 1,5,9,13-Tetraselenacyclohexadecane and 1,5,9,13,17,21-Hexaselenacyclotetracosane ; _journal_name_full 'Inorganic Chemistry' _journal_page_first 3667 _journal_page_last 3674 _journal_paper_doi 10.1021/ic951151j _journal_volume 35 _journal_year 1996 _chemical_formula_moiety 'Pd Se4 Cl F4 C12 B1 H24 ' _chemical_formula_sum 'C12 H24 B Cl F4 Pd Se4' _chemical_formula_weight 712.8 _chemical_name_systematic ? _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _cell_angle_alpha 76.607(6) _cell_angle_beta 86.020(6) _cell_angle_gamma 85.186(5) _cell_formula_units_Z 2 _cell_length_a 7.2377(4) _cell_length_b 10.7784(7) _cell_length_c 12.9523(9) _cell_measurement_reflns_used 25 _cell_measurement_temperature 295 _cell_measurement_theta_max 21.00 _cell_measurement_theta_min 16.00 _cell_volume 978.17(11) _computing_data_reduction 'NRCVAX DATRD2' _computing_molecular_graphics NRCVAX _computing_publication_material 'NRCVAX TABLES and CRYSTALS' _computing_structure_refinement CRYSTALS _computing_structure_solution 'NRCVAX SOLVER' _diffrn_ambient_temperature 295 _diffrn_measurement_device 'Nonius CAD-4 ' _diffrn_measurement_method 'Theta/2theta scan b/P/b ' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'xray tube' _diffrn_radiation_type 'Molybdenum K\a' _diffrn_radiation_wavelength 0.70930 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 2864 _diffrn_reflns_theta_max 23.5 _diffrn_reflns_theta_min 2 _diffrn_standards_decay_% 0.0 _diffrn_standards_interval_time 60 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 8.474 _exptl_absorpt_correction_T_max 0.575 _exptl_absorpt_correction_T_min 0.218 _exptl_absorpt_correction_type integration _exptl_crystal_colour red _exptl_crystal_density_diffrn 2.420 _exptl_crystal_description plate _exptl_crystal_F_000 671.88 _exptl_crystal_size_max 0.21 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.07 _refine_diff_density_max 0.6(1) _refine_diff_density_min -0.6(1) _refine_ls_goodness_of_fit_obs 1.55 _refine_ls_matrix_type full _refine_ls_number_parameters 214 _refine_ls_number_reflns 2134 _refine_ls_number_restraints 31 _refine_ls_R_factor_obs 0.022 _refine_ls_shift/esd_max 0.13 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/(\s^2^(F)+0.0001F^2^)' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_obs 0.027 _reflns_number_observed 2134 _reflns_number_total 2864 _reflns_observed_criterion 'Inet > 2.5\s(Inet)' _cod_data_source_file ic951151j_3.cif _cod_data_source_block rpdse4 _cod_depositor_comments ; Marking three atom disorder sites. Atoms 'B1', 'F2', 'F3', 'F4' were marked as belonging to the disorder site '1', atoms 'B2', 'F5', 'F6', 'F7' were marked as belonging to the disorder site '2' and atoms 'B3', 'F8', 'F9', 'F10' were marked as belonging to the disorder site '3'. Antanas Vaitkus, 2017-02-17 Changing the occupancy of atoms 'F5', 'F6', 'F7', 'B2' from '0.030(1)' to '0.30(1)' after consulting the supplementary data of the original publication. Antanas Vaitkus, 2017-02-17 The following automatic conversions were performed: '_refine_ls_weighting_scheme' value '1/(\s^2^(F)+0.0001F^2^)' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/(\s^2^(F)+0.0001F^2^)'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_formula_sum 'Pd Se4 Cl F4 C12 B1 H24 ' _cod_database_code 4324065 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,-y,-z loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 _atom_site_aniso_type_symbol Pd 0.03821(24) 0.02942(24) 0.0327(3) -0.00971(19) -0.00294(17) -0.00166(17) Pd Se3 0.0396(3) 0.0373(3) 0.0451(4) -0.0113(3) -0.0026(3) -0.00558(24) Se Se7 0.0383(3) 0.0401(4) 0.0465(4) -0.0167(3) -0.0038(3) 0.00400(24) Se Se11 0.0518(4) 0.0334(3) 0.0398(4) -0.0046(3) -0.0046(3) -0.0052(3) Se Se15 0.0528(3) 0.0397(4) 0.0320(3) -0.0110(3) -0.0016(3) -0.0014(3) Se Cl 0.0426(8) 0.0474(9) 0.0460(9) -0.0068(7) -0.0046(7) 0.0032(6) Cl C1 0.060(4) 0.032(4) 0.062(4) -0.009(3) -0.002(3) 0.004(3) C C2 0.063(4) 0.036(4) 0.058(4) -0.014(3) 0.003(3) -0.006(3) C C4 0.046(3) 0.042(4) 0.043(4) 0.001(3) -0.003(3) 0.001(3) C C5 0.044(3) 0.059(4) 0.041(4) -0.011(3) -0.001(3) 0.001(3) C C6 0.048(3) 0.059(4) 0.041(4) -0.023(3) -0.003(3) 0.001(3) C C8 0.066(4) 0.044(4) 0.061(4) -0.029(3) -0.001(3) 0.000(3) C C9 0.066(4) 0.043(4) 0.062(4) -0.025(3) -0.013(3) -0.006(3) C C10 0.072(4) 0.034(4) 0.078(5) -0.019(4) -0.004(4) -0.013(3) C C12 0.043(3) 0.059(4) 0.059(4) -0.014(4) 0.003(3) -0.011(3) C C13 0.037(3) 0.071(5) 0.056(4) -0.010(4) -0.001(3) -0.004(3) C C14 0.045(3) 0.060(4) 0.049(4) -0.016(3) 0.005(3) 0.000(3) C C16 0.073(4) 0.041(4) 0.054(4) -0.021(3) 0.005(3) -0.002(3) C F1 0.079(3) 0.126(4) 0.089(3) -0.027(3) -0.0345(24) -0.003(3) F loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol _atom_site_occupancy _atom_site_disorder_group Pd1 0.35455(5) 0.30863(4) 0.24867(3) 0.03301(24) Uij ? . Pd . . Se3 0.17559(7) 0.12251(5) 0.32612(5) 0.0402(3) Uij ? . Se . . Se7 0.14335(7) 0.41919(5) 0.36056(5) 0.0408(3) Uij ? . Se . . Se11 0.49486(8) 0.50055(5) 0.14692(5) 0.0421(3) Uij ? . Se . . Se15 0.51439(8) 0.22009(6) 0.10660(4) 0.0411(3) Uij ? . Se . . Cl1 0.65304(18) 0.24643(14) 0.41372(11) 0.0462(8) Uij ? . Cl . . C1 0.5044(8) -0.0270(5) 0.2581(5) 0.052(4) Uij ? . C . . C2 0.3107(8) -0.0380(5) 0.3070(5) 0.052(4) Uij ? . C . . C4 0.2219(7) 0.0918(5) 0.4775(4) 0.045(3) Uij ? . C . . C5 0.1157(8) 0.1902(6) 0.5308(5) 0.049(4) Uij ? . C . . C6 0.1958(8) 0.3201(6) 0.5037(4) 0.048(4) Uij ? . C . . C8 0.2470(8) 0.5755(6) 0.3779(5) 0.055(4) Uij ? . C . . C9 0.4453(8) 0.5933(6) 0.3440(5) 0.054(4) Uij ? . C . . C10 0.4851(9) 0.6338(6) 0.2262(5) 0.060(4) Uij ? . C . . C12 0.7607(7) 0.4538(6) 0.1640(5) 0.053(4) Uij ? . C . . C13 0.8419(8) 0.3583(6) 0.1022(5) 0.055(4) Uij ? . C . . C14 0.7743(8) 0.2257(6) 0.1391(5) 0.051(4) Uij ? . C . . C16 0.5127(9) 0.0347(6) 0.1403(5) 0.055(4) Uij ? . C . . F1 0.8545(5) 0.8084(4) 0.0531(3) 0.096(3) Uij ? . F . . F2 1.0778(14) 0.6659(9) 0.1315(10) 0.0821(12) Uiso ? . F 0.39(1) 1 F3 0.8912(14) 0.7797(15) 0.2274(6) 0.0821(12) Uiso ? . F 0.39(1) 1 F4 1.1121(14) 0.8745(10) 0.1050(10) 0.0821(12) Uiso ? . F 0.39(1) 1 F5 0.9354(17) 0.9262(11) 0.1660(10) 0.0821(12) Uiso ? . F 0.30(1) 2 F6 0.9242(19) 0.7134(12) 0.2216(8) 0.0821(12) Uiso ? . F 0.30(1) 2 F7 1.1503(11) 0.7964(14) 0.1059(11) 0.0821(12) Uiso ? . F 0.30(1) 2 F8 1.0327(20) 0.6714(10) 0.1667(12) 0.0821(12) Uiso ? . F 0.31(1) 3 F9 1.1484(14) 0.8543(16) 0.0768(11) 0.0821(12) Uiso ? . F 0.31(1) 3 F10 0.9210(17) 0.8596(18) 0.2046(10) 0.0821(12) Uiso ? . F 0.31(1) 3 B1 0.9837(8) 0.7830(8) 0.1301(5) 0.0587(23) Uiso ? . B 0.39(1) 1 B2 0.9643(10) 0.8113(9) 0.1354(5) 0.0587(23) Uiso ? . B 0.30(1) 2 B3 0.9895(9) 0.7996(9) 0.1252(6) 0.0587(23) Uiso ? . B 0.31(1) 3 H11 0.5687(8) 0.0228(5) 0.2937(5) 0.060(4) Uiso ? . H . . H12 0.5642(8) -0.1104(5) 0.2679(5) 0.060(4) Uiso ? . H . . H21 0.3174(8) -0.0948(5) 0.3750(5) 0.062(4) Uiso ? . H . . H22 0.2409(8) -0.0734(5) 0.2628(5) 0.062(4) Uiso ? . H . . H41 0.3509(7) 0.0953(5) 0.4847(4) 0.054(4) Uiso ? . H . . H42 0.1848(7) 0.0093(5) 0.5120(4) 0.054(4) Uiso ? . H . . H51 0.1164(8) 0.1583(6) 0.6056(5) 0.059(4) Uiso ? . H . . H52 -0.0085(8) 0.2007(6) 0.5093(5) 0.059(4) Uiso ? . H . . H61 0.1444(8) 0.3673(6) 0.5535(4) 0.060(4) Uiso ? . H . . H62 0.3266(8) 0.3079(6) 0.5090(4) 0.060(4) Uiso ? . H . . H81 0.2331(8) 0.5763(6) 0.4512(5) 0.068(4) Uiso ? . H . . H82 0.1754(8) 0.6462(6) 0.3381(5) 0.068(4) Uiso ? . H . . H91 0.4858(8) 0.6567(6) 0.3759(5) 0.067(4) Uiso ? . H . . H92 0.5144(8) 0.5144(6) 0.3692(5) 0.067(4) Uiso ? . H . . H01 0.6018(9) 0.6704(6) 0.2148(5) 0.070(4) Uiso ? . H . . H02 0.3907(9) 0.6969(6) 0.1982(5) 0.070(4) Uiso ? . H . . H21 0.8255(7) 0.5293(6) 0.1412(5) 0.064(4) Uiso ? . H . . H22 0.7786(7) 0.4186(6) 0.2372(5) 0.064(4) Uiso ? . H . . H31 0.9729(8) 0.3519(6) 0.1068(5) 0.064(4) Uiso ? . H . . H32 0.8118(8) 0.3897(6) 0.0301(5) 0.064(4) Uiso ? . H . . H41 0.7850(8) 0.1986(6) 0.2138(5) 0.062(4) Uiso ? . H . . H42 0.8497(8) 0.1693(6) 0.1047(5) 0.062(4) Uiso ? . H . . H61 0.6226(9) 0.0013(6) 0.1089(5) 0.066(4) Uiso ? . H . . H62 0.4074(9) 0.0127(6) 0.1103(5) 0.066(4) Uiso ? . H . . loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source Pd ? -1.177 1.007 'International Tables Vol. IV Table 2.2B' Se ? -0.178 2.223 'International Tables Vol. IV Table 2.2B' Cl ? 0.132 0.159 'International Tables Vol. IV Table 2.2B' F ? 0.014 0.010 'International Tables Vol. IV Table 2.2B' C ? 0.002 0.002 'International Tables Vol. IV Table 2.2B' B ? 0.000 0.001 'International Tables Vol. IV Table 2.2B' H ? 0.000 0.000 'International Tables Vol. IV Table 2.2B' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_2 _geom_angle_site_symmetry_3 _geom_angle_publ_flag Se3 Pd1 Se7 84.89(2) ? ? ? ? Se3 Pd1 Se11 170.03(3) ? ? ? ? Se3 Pd1 Se15 96.14(2) ? ? ? ? Se7 Pd1 Se11 95.63(2) ? ? ? ? Se7 Pd1 Se15 166.97(2) ? ? ? ? Se11 Pd1 Se15 81.12(2) ? ? ? ? Pd1 Se3 C2 111.6(2) ? ? ? ? Pd1 Se3 C4 102.4(2) ? ? ? ? C2 Se3 C4 94.5(3) ? ? ? ? Pd1 Se7 C6 102.0(2) ? ? ? ? Pd1 Se7 C8 110.9(2) ? ? ? ? C6 Se7 C8 95.1(3) ? ? ? ? Pd1 Se11 C10 112.2(2) ? ? ? ? Pd1 Se11 C12 102.2(2) ? ? ? ? C10 Se11 C12 94.6(3) ? ? ? ? Pd1 Se15 C14 100.5(2) ? ? ? ? Pd1 Se15 C16 110.8(2) ? ? ? ? C14 Se15 C16 96.1(3) ? ? ? ? C2 C1 C16 113.8(5) ? ? ? ? Se3 C2 C1 116.2(4) ? ? ? ? Se3 C4 C5 112.4(4) ? ? ? ? C4 C5 C6 114.0(5) ? ? ? ? Se7 C6 C5 113.5(4) ? ? ? ? Se7 C8 C9 117.7(4) ? ? ? ? C8 C9 C10 115.2(5) ? ? ? ? Se11 C10 C9 116.5(4) ? ? ? ? Se11 C12 C13 114.5(4) ? ? ? ? C12 C13 C14 115.3(5) ? ? ? ? Se15 C14 C13 112.1(4) ? ? ? ? Se15 C16 C1 114.7(4) ? ? ? ? F1 B1 F2 109.7 ? ? ? ? F1 B1 F3 108.4 ? ? ? ? F1 B1 F4 109.1 ? ? ? ? F2 B1 F3 109.3 ? ? ? ? F2 B1 F4 107.6 ? ? ? ? F3 B1 F4 112.8 ? ? ? ? F1 B2 F5 111.3 ? ? ? ? F1 B2 F6 109.7 ? ? ? ? F1 B2 F7 111.1 ? ? ? ? F5 B2 F6 108.9 ? ? ? ? F5 B2 F7 107.4 ? ? ? ? F6 B2 F7 108.3 ? ? ? ? F1 B3 F8 107.4 ? ? ? ? F1 B3 F9 111.4 ? ? ? ? F1 B3 F10 109.2 ? ? ? ? F8 B3 F9 108.6 ? ? ? ? F8 B3 F10 110.4 ? ? ? ? F9 B3 F10 109.8 ? ? ? ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_publ_flag Pd1 Se3 2.4560(7) ? ? ? Pd1 Se7 2.4583(7) ? ? ? Pd1 Se11 2.4395(7) ? ? ? Pd1 Se15 2.4430(7) ? ? ? Se3 C2 1.973(6) ? ? ? Se3 C4 1.959(5) ? ? ? Se7 C6 1.958(6) ? ? ? Se7 C8 1.965(5) ? ? ? Se11 C10 1.944(6) ? ? ? Se11 C12 1.962(5) ? ? ? Se15 C14 1.965(5) ? ? ? Se15 C16 1.944(6) ? ? ? C1 C2 1.500(8) ? ? ? C1 C16 1.516(8) ? ? ? C4 C5 1.523(7) ? ? ? C5 C6 1.517(8) ? ? ? C8 C9 1.487(8) ? ? ? C9 C10 1.502(8) ? ? ? C12 C13 1.504(8) ? ? ? C13 C14 1.510(8) ? ? ? F1 B1 1.38 ? ? ? F1 B2 1.38 ? ? ? F1 B3 1.38 ? ? ? F2 B1 1.38 ? ? ? F3 B1 1.38 ? ? ? F4 B1 1.38 ? ? ? F5 B2 1.38 ? ? ? F6 B2 1.38 ? ? ? F7 B2 1.38 ? ? ? F8 B3 1.38 ? ? ? F9 B3 1.38 ? ? ? F10 B3 1.38 ? ? ? loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_1 _geom_contact_site_symmetry_2 _geom_contact_publ_flag ? ? ? ? ? ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 C16 C1 C2 Se3 -72.6(5) ? ? ? ? C2 Se3 C4 C5 -172.5(5) ? ? ? ? C4 C5 C6 Se7 75.0(4) ? ? ? ? C6 Se7 C8 C9 92.5(5) ? ? ? ? C8 C9 C10 Se11 -78.9(5) ? ? ? ? C10 Se11 C12 C13 -173.3(6) ? ? ? ? C12 C13 C14 Se15 70.6(5) ? ? ? ? C14 Se15 C16 C1 75.6(4) ? ? ? ? C4 Se3 C2 C1 -100.3(5) ? ? ? ? Se3 C4 C5 C6 -74.7(4) ? ? ? ? C8 Se7 C6 C5 173.4(5) ? ? ? ? Se7 C8 C9 C10 76.4(5) ? ? ? ? C12 Se11 C10 C9 -88.9(5) ? ? ? ? Se11 C12 C13 C14 -67.7(5) ? ? ? ? C16 Se15 C14 C13 169.0(6) ? ? ? ? C2 C1 C16 Se15 88.3(5) ? ? ? ? Se7 Pd1 Se3 C2 -162.3(2) ? ? ? ? Se15 Pd1 Se3 C2 30.8(2) ? ? ? ? Se3 Pd1 Se7 C6 61.7(2) ? ? ? ? Se11 Pd1 Se7 C6 -128.3(2) ? ? ? ? Se7 Pd1 Se11 C10 26.5(2) ? ? ? ? Se15 Pd1 Se11 C10 -166.3(2) ? ? ? ? Se3 Pd1 Se15 C14 -121.3(2) ? ? ? ? Se11 Pd1 Se15 C14 68.3(2) ? ? ? ? Se7 Pd1 Se3 C4 -62.3(2) ? ? ? ? Se15 Pd1 Se3 C4 130.7(2) ? ? ? ? Se3 Pd1 Se7 C8 162.0(2) ? ? ? ? Se11 Pd1 Se7 C8 -28.0(2) ? ? ? ? Se7 Pd1 Se11 C12 126.7(2) ? ? ? ? Se15 Pd1 Se11 C12 -66.1(2) ? ? ? ? Se3 Pd1 Se15 C16 -20.6(2) ? ? ? ? Se11 Pd1 Se15 C16 169.1(2) ? ? ? ? Pd1 Se3 C2 C1 5.0(3) ? ? ? ? Pd1 Se3 C4 C5 74.2(3) ? ? ? ? Pd1 Se7 C6 C5 -73.9(4) ? ? ? ? Pd1 Se7 C8 C9 -12.5(3) ? ? ? ? Pd1 Se11 C10 C9 16.3(3) ? ? ? ? Pd1 Se11 C12 C13 72.8(4) ? ? ? ? Pd1 Se15 C14 C13 -78.4(4) ? ? ? ? Pd1 Se15 C16 C1 -28.1(3) ? ? ? ?