#------------------------------------------------------------------------------ #$Date: 2019-11-10 15:29:50 +0200 (Sun, 10 Nov 2019) $ #$Revision: 225947 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/51/58/4515847.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4515847 loop_ _publ_author_name 'Yang, Hui' 'Guo, Feng' 'Lama, Prem' 'Gao, Wen-Yang' 'Wu, Hui' 'Barbour, Leonard J.' 'Zhou, Wei' 'Zhang, Jian' 'Aguila, Briana' 'Ma, Shengqian' _publ_section_title ; Visualizing Structural Transformation and Guest Binding in a Flexible Metal-Organic Framework under High Pressure and Room Temperature. ; _journal_issue 9 _journal_name_full 'ACS central science' _journal_page_first 1194 _journal_page_last 1200 _journal_paper_doi 10.1021/acscentsci.8b00378 _journal_volume 4 _journal_year 2018 _chemical_absolute_configuration ad _chemical_formula_moiety '0.25(C88 H72 Cd4 N16 O16)' _chemical_formula_sum 'C22 H18 Cd N4 O4' _chemical_formula_weight 514.80 _space_group_crystal_system tetragonal _space_group_IT_number 90 _space_group_name_Hall 'P 4ab 2ab' _space_group_name_H-M_alt 'P 4 21 2' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_date 2017-10-23 _audit_creation_method ; Olex2 1.2 (compiled 2017.08.10 svn.r3458 for OlexSys, GUI svn.r5381) ; _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 18.855(4) _cell_length_b 18.855(4) _cell_length_c 8.0473(19) _cell_measurement_reflns_used 2525 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 18.32 _cell_measurement_theta_min 2.44 _cell_volume 2860.9(11) _computing_molecular_graphics 'Olex2 (Dolomanov et al., 2009)' _computing_publication_material 'Olex2 (Dolomanov et al., 2009)' _computing_structure_refinement 'ShelXH-1997 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 298.15 _diffrn_measured_fraction_theta_full 0.991 _diffrn_measured_fraction_theta_max 0.991 _diffrn_measurement_device_type 'Bruker D8 venture PHOTON II CPAD' _diffrn_measurement_method '\f \ch and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.2011 _diffrn_reflns_av_unetI/netI 0.0683 _diffrn_reflns_limit_h_max 22 _diffrn_reflns_limit_h_min -22 _diffrn_reflns_limit_k_max 22 _diffrn_reflns_limit_k_min -22 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 43765 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 2.42 _diffrn_source 'fine-focus sealed tube' _exptl_absorpt_coefficient_mu 0.790 _exptl_absorpt_correction_T_max 0.9167 _exptl_absorpt_correction_T_min 0.7335 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details SADABS _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.195 _exptl_crystal_description block _exptl_crystal_F_000 1032 _exptl_crystal_size_max 0.418 _exptl_crystal_size_mid 0.236 _exptl_crystal_size_min 0.112 _platon_squeeze_details ; ; _refine_diff_density_max 0.298 _refine_diff_density_min -0.670 _refine_diff_density_rms 0.069 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.09(5) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.032 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 142 _refine_ls_number_reflns 2525 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.032 _refine_ls_R_factor_all 0.0472 _refine_ls_R_factor_gt 0.0428 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0509P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1040 _refine_ls_wR_factor_ref 0.1065 _reflns_number_gt 2299 _reflns_number_total 2525 _reflns_threshold_expression >2sigma(I) _cod_data_source_file oc8b00378_si_003.cif _cod_data_source_block 298k_sqd _cod_original_cell_volume 2860.8(11) _cod_database_code 4515847 _olex2_refinement_description ; 1. Fixed Uiso At 1.2 times of: All C(H) groups At 1.5 times of: All C(H,H,H) groups 2.a Aromatic/amide H refined with riding coordinates: C1(H1), C2(H2), C6(H6), C7(H7), C9(H9), C10(H10) 2.b Idealised Me refined as rotating group: C4(H4A,H4B,H4C) ; _olex2_submission_special_instructions 'No special instructions were received' loop_ _space_group_symop_id _space_group_symop_operation_xyz 1 'x, y, z' 2 '-y+1/2, x+1/2, z' 3 '-x, -y, z' 4 'y+1/2, -x+1/2, z' 5 'x+1/2, -y+1/2, -z' 6 '-x+1/2, y+1/2, -z' 7 'y, x, -z' 8 '-y, -x, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_calc_flag _atom_site_site_symmetry_order _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy Cd1 Cd 0.215630(13) 0.215630(13) 0.5000 0.04209(16) Uani 1 d 2 S T P O1 O 0.1807(2) 0.22884(19) 0.2280(4) 0.0739(10) Uani 1 d 1 . . . O2 O 0.09278(18) 0.22165(19) 0.4093(4) 0.0698(9) Uani 1 d 1 . . . N1 N -0.16854(17) 0.29777(19) -0.4256(4) 0.0491(8) Uani 1 d 1 . . . N2 N -0.07493(19) 0.2946(2) -0.2662(4) 0.0527(9) Uani 1 d 1 . . . C1 C -0.1235(2) 0.3512(2) -0.4719(6) 0.0609(12) Uani 1 d 1 . . . H1 H -0.1315 0.3831 -0.5580 0.073 Uiso 1 calc 1 R . . C2 C -0.0655(3) 0.3504(3) -0.3727(6) 0.0668(12) Uani 1 d 1 . . . H2 H -0.0271 0.3814 -0.3762 0.080 Uiso 1 calc 1 R . . C3 C -0.1369(2) 0.2627(2) -0.3057(5) 0.0525(10) Uani 1 d 1 . . . C4 C -0.1646(3) 0.1976(3) -0.2272(8) 0.0871(19) Uani 1 d 1 . . . H4A H -0.2052 0.2091 -0.1606 0.131 Uiso 1 calc 1 GR . . H4B H -0.1286 0.1770 -0.1582 0.131 Uiso 1 calc 1 GR . . H4C H -0.1781 0.1643 -0.3119 0.131 Uiso 1 calc 1 GR . . C5 C -0.0276(2) 0.2760(3) -0.1323(6) 0.0553(12) Uani 1 d 1 . . . C6 C -0.0521(3) 0.2743(3) 0.0303(6) 0.0704(14) Uani 1 d 1 . . . H6 H -0.0994 0.2844 0.0529 0.084 Uiso 1 calc 1 R . . C7 C -0.0069(3) 0.2578(3) 0.1572(6) 0.0664(16) Uani 1 d 1 . . . H7 H -0.0242 0.2547 0.2652 0.080 Uiso 1 calc 1 R . . C8 C 0.0654(3) 0.2455(3) 0.1267(6) 0.0538(12) Uani 1 d 1 . . . C9 C 0.0885(2) 0.2474(3) -0.0384(5) 0.0585(12) Uani 1 d 1 . . . H9 H 0.1359 0.2381 -0.0626 0.070 Uiso 1 calc 1 R . . C10 C 0.0419(2) 0.2628(3) -0.1661(7) 0.0602(14) Uani 1 d 1 . . . H10 H 0.0580 0.2641 -0.2753 0.072 Uiso 1 calc 1 R . . C11 C 0.1155(3) 0.2298(3) 0.2645(6) 0.0585(12) Uani 1 d 1 . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Cd1 0.04661(19) 0.04661(19) 0.0330(2) 0.00173(18) -0.00173(18) 0.00399(14) O1 0.063(2) 0.111(3) 0.0467(19) -0.0175(18) -0.0201(17) 0.026(2) O2 0.068(2) 0.091(2) 0.0504(19) 0.0179(18) -0.0256(16) -0.0144(17) N1 0.0454(19) 0.062(2) 0.0394(17) 0.0146(16) -0.0018(15) -0.0058(16) N2 0.047(2) 0.069(2) 0.0417(17) 0.0086(18) -0.0098(16) 0.0006(18) C1 0.047(2) 0.067(3) 0.068(3) 0.019(3) -0.005(2) -0.0078(19) C2 0.051(3) 0.083(3) 0.066(3) 0.012(3) 0.006(2) -0.016(3) C3 0.048(2) 0.060(3) 0.050(2) 0.009(2) -0.005(2) -0.004(2) C4 0.085(4) 0.087(4) 0.089(4) 0.051(3) -0.031(3) -0.021(3) C5 0.053(3) 0.077(3) 0.035(2) 0.003(3) -0.0061(19) 0.008(2) C6 0.046(2) 0.116(4) 0.050(3) -0.001(3) -0.002(2) 0.013(2) C7 0.061(3) 0.102(5) 0.036(2) 0.006(2) 0.001(3) 0.005(3) C8 0.054(3) 0.064(3) 0.043(2) -0.003(2) -0.021(2) 0.006(2) C9 0.052(2) 0.084(3) 0.039(3) -0.005(2) -0.0034(19) 0.014(2) C10 0.043(3) 0.089(4) 0.048(3) -0.002(3) -0.003(2) 0.003(3) C11 0.062(3) 0.060(3) 0.053(3) -0.009(2) -0.010(2) 0.007(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cd Cd -0.8075 1.2024 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O1 Cd1 O1 165.6(2) 7_556 . O1 Cd1 O2 113.72(12) . 7_556 O1 Cd1 O2 113.72(12) 7_556 . O1 Cd1 O2 55.71(12) 7_556 7_556 O1 Cd1 O2 55.71(12) . . O1 Cd1 C11 28.02(14) . . O1 Cd1 C11 140.87(15) . 7_556 O1 Cd1 C11 28.02(14) 7_556 7_556 O1 Cd1 C11 140.87(15) 7_556 . O2 Cd1 O2 100.31(16) 7_556 . O2 Cd1 C11 109.83(13) . 7_556 O2 Cd1 C11 27.72(13) . . O2 Cd1 C11 27.71(13) 7_556 7_556 O2 Cd1 C11 109.84(13) 7_556 . N1 Cd1 O1 92.06(13) 2_556 7_556 N1 Cd1 O1 96.59(12) 5 7_556 N1 Cd1 O1 92.06(13) 5 . N1 Cd1 O1 96.58(12) 2_556 . N1 Cd1 O2 147.09(12) 2_556 7_556 N1 Cd1 O2 85.90(13) 2_556 . N1 Cd1 O2 85.90(13) 5 7_556 N1 Cd1 O2 147.09(12) 5 . N1 Cd1 N1 106.36(18) 5 2_556 N1 Cd1 C11 119.93(14) 5 . N1 Cd1 C11 90.68(13) 5 7_556 N1 Cd1 C11 119.93(14) 2_556 7_556 N1 Cd1 C11 90.68(13) 2_556 . C11 Cd1 C11 129.6(2) . 7_556 C11 O1 Cd1 93.4(3) . . C11 O2 Cd1 87.6(3) . . C1 N1 Cd1 127.2(3) . 4_454 C3 N1 Cd1 124.9(3) . 4_454 C3 N1 C1 106.8(4) . . C2 N2 C5 125.0(4) . . C3 N2 C2 107.9(3) . . C3 N2 C5 127.0(4) . . C2 C1 N1 109.4(4) . . C1 C2 N2 105.8(4) . . N1 C3 N2 109.9(4) . . N1 C3 C4 124.9(4) . . N2 C3 C4 125.2(4) . . C6 C5 N2 120.3(4) . . C10 C5 N2 119.4(4) . . C10 C5 C6 120.3(5) . . C7 C6 C5 120.1(5) . . C6 C7 C8 120.9(4) . . C7 C8 C11 121.3(4) . . C9 C8 C7 117.7(4) . . C9 C8 C11 121.0(4) . . C10 C9 C8 120.8(4) . . C5 C10 C9 120.1(5) . . O1 C11 Cd1 58.6(2) . . O1 C11 C8 116.6(4) . . O2 C11 Cd1 64.6(2) . . O2 C11 O1 123.2(4) . . O2 C11 C8 120.1(5) . . C8 C11 Cd1 172.8(4) . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 Cd1 O1 2.299(3) 7_556 Cd1 O1 2.299(3) . Cd1 O2 2.431(3) . Cd1 O2 2.431(3) 7_556 Cd1 N1 2.279(3) 5 Cd1 N1 2.279(3) 2_556 Cd1 C11 2.688(5) 7_556 Cd1 C11 2.688(5) . O1 C11 1.265(6) . O2 C11 1.251(6) . N1 Cd1 2.279(3) 4_454 N1 C1 1.369(5) . N1 C3 1.314(5) . N2 C2 1.368(6) . N2 C3 1.352(6) . N2 C5 1.442(5) . C1 C2 1.354(6) . C3 C4 1.476(6) . C5 C6 1.388(7) . C5 C10 1.361(6) . C6 C7 1.367(7) . C7 C8 1.403(9) . C8 C9 1.399(7) . C8 C11 1.487(6) . C9 C10 1.384(6) . loop_ _platon_squeeze_void_nr _platon_squeeze_void_average_x _platon_squeeze_void_average_y _platon_squeeze_void_average_z _platon_squeeze_void_volume _platon_squeeze_void_count_electrons _platon_squeeze_void_content 1 0.000 0.000 -0.035 314 91 ' ' 2 0.000 0.500 0.111 159 43 ' ' 3 0.500 0.500 -0.036 314 91 ' ' 4 0.500 0.000 -0.112 159 43 ' '