#------------------------------------------------------------------------------ #$Date: 2014-12-22 15:53:09 +0200 (Mon, 22 Dec 2014) $ #$Revision: 129004 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/11/60/7116081.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7116081 loop_ _publ_author_name 'Kentaro Okuma' 'Tomohiro Koga' 'Saori Ozaki' 'Yutaro Suzuki' 'Kenta Horigami' 'Noriyoshi Nagahora' 'Kosei Shioji' 'Masatora Fukuda' 'Masanobu Deshimaru' _publ_section_title ; One-pot synthesis of dibenzo[b,h][1,6]naphthyridines from 2-acetylaminobenzaldehyde: application to a fluorescent DNA-binding compound ; _journal_name_full Chem.Commun. _journal_page_first 15525 _journal_paper_doi 10.1039/C4cc07807A _journal_volume 50 _journal_year 2014 _chemical_formula_moiety 'C24 H19 Br N2 O2' _chemical_formula_sum 'C24 H19 Br N2 O2' _chemical_formula_weight 447.32 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_Int_Tables_number 14 _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 113.546(7) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 13.424(16) _cell_length_b 9.834(11) _cell_length_c 16.368(19) _cell_measurement_temperature 293(2) _cell_volume 1981(4) _computing_cell_refinement 'Crystal Clear ver 1.3.6 SP3 (Rigaku, 2007)' _computing_data_collection 'Crystal Clear ver 1.3.6 SP3 (Rigaku, 2007)' _computing_data_reduction 'Crystal Clear ver 1.3.6 SP3 (Rigaku, 2007)' _computing_molecular_graphics 'ORTEPIII (Burnett & Johnson, 1996)' _computing_publication_material 'yadokari-XG (Wakita, 2005)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device_type 'Rigaku Mercury' _diffrn_measurement_method 'Omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71070 _diffrn_reflns_av_R_equivalents 0.0934 _diffrn_reflns_av_sigmaI/netI 0.0976 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min -16 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 16408 _diffrn_reflns_theta_full 25.50 _diffrn_reflns_theta_max 25.50 _diffrn_reflns_theta_min 3.27 _exptl_absorpt_coefficient_mu 2.099 _exptl_absorpt_correction_T_max 0.8176 _exptl_absorpt_correction_T_min 0.6790 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; Jacobson, RA (1998). REQAB. Version 1.1. Molecular Structure Corporation, 9009 Research Forest Drive, The Woodlands, TX 77381, USA. ; _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.500 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 912 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.374 _refine_diff_density_min -0.542 _refine_diff_density_rms 0.077 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.063 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 267 _refine_ls_number_reflns 3661 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.063 _refine_ls_R_factor_all 0.1578 _refine_ls_R_factor_gt 0.0902 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1643P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.2539 _refine_ls_wR_factor_ref 0.3358 _reflns_number_gt 2031 _reflns_number_total 3661 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file c4cc07807a2.cif _[local]_cod_data_source_block 101102 _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_database_code 7116081 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C -0.2390(6) 0.8787(7) 0.1162(5) 0.0537(17) Uani 1 1 d . H1 H -0.310(5) 0.830(7) 0.110(4) 0.052(17) Uiso 1 1 d . N1 N -0.2245(5) 0.9750(7) 0.1856(4) 0.0648(17) Uani 1 1 d . H2 H -0.2812 1.0033 0.1926 0.078 Uiso 1 1 calc R C2 C -0.1160(7) 1.1439(9) 0.2853(5) 0.071(2) Uani 1 1 d . H3 H -0.1771 1.1960 0.2769 0.085 Uiso 1 1 calc R C3 C -0.0167(8) 1.1881(10) 0.3419(5) 0.079(2) Uani 1 1 d . H4 H -0.0100 1.2710 0.3710 0.095 Uiso 1 1 calc R C4 C 0.0742(7) 1.1110(10) 0.3566(6) 0.084(3) Uani 1 1 d . H5 H 0.1424 1.1407 0.3958 0.100 Uiso 1 1 calc R C5 C 0.0631(7) 0.9923(9) 0.3134(5) 0.074(2) Uani 1 1 d . H6 H 0.1243 0.9389 0.3241 0.089 Uiso 1 1 calc R C6 C -0.0499(5) 0.8205(8) 0.2098(5) 0.0584(18) Uani 1 1 d . H7 H 0.0091 0.7617 0.2253 0.070 Uiso 1 1 calc R C7 C -0.1441(6) 0.7837(7) 0.1475(5) 0.0549(17) Uani 1 1 d . C8 C -0.1275(6) 1.0234(8) 0.2403(5) 0.0588(18) Uani 1 1 d . C9 C -0.0367(6) 0.9475(7) 0.2534(5) 0.0562(18) Uani 1 1 d . C10 C -0.1658(6) 0.6517(8) 0.1039(5) 0.065(2) Uani 1 1 d . O1 O -0.2577(4) 0.6171(6) 0.0578(4) 0.0785(16) Uani 1 1 d . C11 C -0.0754(6) 0.5575(7) 0.1180(5) 0.0571(18) Uani 1 1 d . C12 C 0.0165(7) 0.5937(9) 0.1064(5) 0.071(2) Uani 1 1 d . H8 H 0.0260 0.6836 0.0934 0.085 Uiso 1 1 calc R C13 C 0.0929(7) 0.5014(9) 0.1134(6) 0.075(2) Uani 1 1 d . H9 H 0.1545 0.5268 0.1044 0.090 Uiso 1 1 calc R C14 C 0.0799(6) 0.3718(8) 0.1335(5) 0.064(2) Uani 1 1 d . C15 C -0.0089(7) 0.3327(9) 0.1462(6) 0.073(2) Uani 1 1 d . H10 H -0.0166 0.2432 0.1610 0.088 Uiso 1 1 calc R C16 C -0.0872(6) 0.4262(8) 0.1371(5) 0.070(2) Uani 1 1 d . H11 H -0.1498 0.3995 0.1441 0.084 Uiso 1 1 calc R Br1 Br 0.18417(9) 0.24175(11) 0.14169(8) 0.1001(6) Uani 1 1 d . C17 C -0.2551(6) 0.9443(7) 0.0301(4) 0.0543(17) Uani 1 1 d . C18 C -0.3423(5) 0.9203(7) -0.0475(5) 0.0543(17) Uani 1 1 d . C19 C -0.3560(6) 0.9867(8) -0.1241(5) 0.065(2) Uani 1 1 d . H12 H -0.4159 0.9681 -0.1765 0.078 Uiso 1 1 calc R C20 C -0.2816(8) 1.0799(9) -0.1233(6) 0.084(3) Uani 1 1 d . H13 H -0.2925 1.1289 -0.1747 0.101 Uiso 1 1 calc R C21 C -0.1912(8) 1.1026(9) -0.0481(6) 0.086(3) Uani 1 1 d . H14 H -0.1381 1.1629 -0.0487 0.103 Uiso 1 1 calc R C22 C -0.1794(7) 1.0362(9) 0.0275(5) 0.072(2) Uani 1 1 d . H15 H -0.1183 1.0533 0.0794 0.087 Uiso 1 1 calc R N2 N -0.4162(4) 0.8207(7) -0.0490(4) 0.0620(16) Uani 1 1 d . H16 H -0.3897 0.7470 -0.0204 0.074 Uiso 1 1 calc R C23 C -0.5228(7) 0.8275(11) -0.0899(6) 0.076(2) Uani 1 1 d . O2 O -0.5661(4) 0.9283(8) -0.1308(5) 0.101(2) Uani 1 1 d . C24 C -0.5846(7) 0.7146(12) -0.0776(7) 0.095(3) Uani 1 1 d . H17 H -0.6239 0.7438 -0.0430 0.143 Uiso 1 1 calc R H18 H -0.5360 0.6422 -0.0470 0.143 Uiso 1 1 calc R H19 H -0.6348 0.6828 -0.1347 0.143 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.044(4) 0.058(4) 0.056(4) 0.005(3) 0.017(3) 0.003(3) N1 0.052(4) 0.082(5) 0.061(4) -0.006(3) 0.022(3) 0.011(3) C2 0.072(5) 0.078(6) 0.061(5) 0.006(4) 0.024(4) 0.017(4) C3 0.089(7) 0.081(6) 0.059(5) -0.015(4) 0.022(4) 0.003(5) C4 0.063(5) 0.095(7) 0.082(6) -0.016(5) 0.017(4) -0.007(5) C5 0.067(5) 0.080(6) 0.063(5) -0.010(4) 0.013(4) 0.001(4) C6 0.047(4) 0.065(5) 0.059(4) 0.003(4) 0.016(3) 0.010(3) C7 0.054(4) 0.056(5) 0.054(4) 0.006(3) 0.021(3) 0.002(3) C8 0.050(4) 0.076(5) 0.052(4) -0.003(4) 0.023(3) 0.000(3) C9 0.055(4) 0.055(4) 0.055(4) -0.002(3) 0.017(3) 0.003(3) C10 0.067(5) 0.058(5) 0.059(4) 0.008(4) 0.015(4) -0.004(4) O1 0.055(3) 0.068(4) 0.092(4) -0.004(3) 0.008(3) -0.006(3) C11 0.051(4) 0.054(5) 0.059(4) 0.000(3) 0.015(3) 0.002(3) C12 0.072(5) 0.067(6) 0.075(5) 0.008(4) 0.032(4) -0.006(4) C13 0.075(6) 0.074(6) 0.082(6) -0.005(4) 0.039(5) -0.004(4) C14 0.072(5) 0.064(5) 0.051(4) -0.001(3) 0.019(4) 0.007(4) C15 0.072(5) 0.068(6) 0.082(6) 0.005(4) 0.034(4) -0.005(4) C16 0.056(5) 0.072(6) 0.082(5) -0.003(4) 0.027(4) 0.002(4) Br1 0.0969(9) 0.0877(9) 0.1221(11) -0.0203(6) 0.0502(8) 0.0177(5) C17 0.054(4) 0.057(4) 0.051(4) -0.001(3) 0.021(3) -0.004(3) C18 0.046(4) 0.054(4) 0.053(4) -0.002(3) 0.010(3) 0.010(3) C19 0.061(5) 0.066(5) 0.059(5) 0.006(4) 0.015(4) 0.013(4) C20 0.110(8) 0.071(6) 0.071(6) 0.021(4) 0.035(5) 0.019(5) C21 0.089(6) 0.080(6) 0.081(6) 0.009(5) 0.025(5) -0.015(5) C22 0.077(5) 0.077(6) 0.050(4) 0.007(4) 0.011(4) -0.018(4) N2 0.043(3) 0.074(4) 0.061(4) -0.003(3) 0.011(3) 0.000(3) C23 0.060(5) 0.101(7) 0.063(5) -0.002(5) 0.021(4) 0.010(5) O2 0.046(3) 0.133(6) 0.117(5) 0.021(5) 0.025(3) 0.017(3) C24 0.059(5) 0.144(9) 0.078(6) -0.022(6) 0.023(5) -0.019(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Br Br -0.2901 2.4595 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N1 C1 C17 112.8(6) N1 C1 C7 108.3(6) C17 C1 C7 112.2(6) N1 C1 H1 102(4) C17 C1 H1 110(3) C7 C1 H1 111(4) C8 N1 C1 123.6(6) C8 N1 H2 118.2 C1 N1 H2 118.2 C3 C2 C8 120.9(8) C3 C2 H3 119.5 C8 C2 H3 119.5 C2 C3 C4 120.3(9) C2 C3 H4 119.8 C4 C3 H4 119.8 C5 C4 C3 119.0(8) C5 C4 H5 120.5 C3 C4 H5 120.5 C4 C5 C9 121.7(8) C4 C5 H6 119.2 C9 C5 H6 119.2 C7 C6 C9 121.4(7) C7 C6 H7 119.3 C9 C6 H7 119.3 C6 C7 C10 124.5(7) C6 C7 C1 121.0(7) C10 C7 C1 114.4(6) N1 C8 C2 122.5(7) N1 C8 C9 118.5(7) C2 C8 C9 118.9(7) C8 C9 C5 119.2(7) C8 C9 C6 118.5(7) C5 C9 C6 122.2(7) O1 C10 C7 120.8(7) O1 C10 C11 119.5(7) C7 C10 C11 119.7(7) C16 C11 C12 118.4(7) C16 C11 C10 118.2(7) C12 C11 C10 123.2(7) C13 C12 C11 121.0(8) C13 C12 H8 119.5 C11 C12 H8 119.5 C12 C13 C14 119.5(8) C12 C13 H9 120.3 C14 C13 H9 120.3 C15 C14 C13 121.2(8) C15 C14 Br1 118.7(7) C13 C14 Br1 120.0(7) C14 C15 C16 119.0(8) C14 C15 H10 120.5 C16 C15 H10 120.5 C11 C16 C15 121.0(8) C11 C16 H11 119.5 C15 C16 H11 119.5 C18 C17 C22 117.2(7) C18 C17 C1 123.7(7) C22 C17 C1 119.0(6) C19 C18 C17 121.8(7) C19 C18 N2 119.4(6) C17 C18 N2 118.8(7) C20 C19 C18 119.3(8) C20 C19 H12 120.3 C18 C19 H12 120.3 C19 C20 C21 120.7(8) C19 C20 H13 119.7 C21 C20 H13 119.7 C22 C21 C20 119.0(9) C22 C21 H14 120.5 C20 C21 H14 120.5 C21 C22 C17 121.9(8) C21 C22 H15 119.1 C17 C22 H15 119.1 C23 N2 C18 126.7(7) C23 N2 H16 116.7 C18 N2 H16 116.7 O2 C23 N2 120.5(9) O2 C23 C24 122.1(9) N2 C23 C24 117.2(9) C23 C24 H17 109.5 C23 C24 H18 109.5 H17 C24 H18 109.5 C23 C24 H19 109.5 H17 C24 H19 109.5 H18 C24 H19 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 N1 1.432(9) C1 C17 1.485(10) C1 C7 1.496(10) C1 H1 1.04(7) N1 C8 1.338(9) N1 H2 0.8600 C2 C3 1.356(12) C2 C8 1.372(11) C2 H3 0.9300 C3 C4 1.374(12) C3 H4 0.9300 C4 C5 1.342(12) C4 H5 0.9300 C5 C9 1.379(10) C5 H6 0.9300 C6 C7 1.319(9) C6 C9 1.413(10) C6 H7 0.9300 C7 C10 1.454(11) C8 C9 1.372(10) C10 O1 1.210(9) C10 C11 1.470(10) C11 C16 1.352(11) C11 C12 1.369(10) C12 C13 1.340(12) C12 H8 0.9300 C13 C14 1.346(12) C13 H9 0.9300 C14 C15 1.346(11) C14 Br1 1.861(8) C15 C16 1.358(11) C15 H10 0.9300 C16 H11 0.9300 C17 C18 1.360(9) C17 C22 1.373(10) C18 C19 1.359(10) C18 N2 1.387(9) C19 C20 1.351(12) C19 H12 0.9300 C20 C21 1.357(12) C20 H13 0.9300 C21 C22 1.353(11) C21 H14 0.9300 C22 H15 0.9300 N2 C23 1.317(10) N2 H16 0.8600 C23 O2 1.207(11) C23 C24 1.448(14) C24 H17 0.9600 C24 H18 0.9600 C24 H19 0.9600 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C17 C1 N1 C8 -90.0(8) C7 C1 N1 C8 34.9(9) C8 C2 C3 C4 -1.4(14) C2 C3 C4 C5 0.6(14) C3 C4 C5 C9 1.5(14) C9 C6 C7 C10 -175.8(7) C9 C6 C7 C1 4.1(11) N1 C1 C7 C6 -24.3(10) C17 C1 C7 C6 100.9(8) N1 C1 C7 C10 155.6(6) C17 C1 C7 C10 -79.1(8) C1 N1 C8 C2 158.0(7) C1 N1 C8 C9 -23.8(11) C3 C2 C8 N1 178.3(8) C3 C2 C8 C9 0.1(12) N1 C8 C9 C5 -176.4(7) C2 C8 C9 C5 1.9(11) N1 C8 C9 C6 -1.1(10) C2 C8 C9 C6 177.2(7) C4 C5 C9 C8 -2.7(13) C4 C5 C9 C6 -177.8(8) C7 C6 C9 C8 10.3(11) C7 C6 C9 C5 -174.6(8) C6 C7 C10 O1 168.4(8) C1 C7 C10 O1 -11.5(10) C6 C7 C10 C11 -9.8(12) C1 C7 C10 C11 170.2(7) O1 C10 C11 C16 -45.1(11) C7 C10 C11 C16 133.2(8) O1 C10 C11 C12 129.9(9) C7 C10 C11 C12 -51.8(11) C16 C11 C12 C13 0.2(12) C10 C11 C12 C13 -174.8(8) C11 C12 C13 C14 -1.0(13) C12 C13 C14 C15 0.4(13) C12 C13 C14 Br1 179.0(7) C13 C14 C15 C16 1.0(13) Br1 C14 C15 C16 -177.6(6) C12 C11 C16 C15 1.3(12) C10 C11 C16 C15 176.5(8) C14 C15 C16 C11 -1.8(13) N1 C1 C17 C18 -124.5(7) C7 C1 C17 C18 112.8(8) N1 C1 C17 C22 54.6(9) C7 C1 C17 C22 -68.1(9) C22 C17 C18 C19 -1.6(11) C1 C17 C18 C19 177.4(7) C22 C17 C18 N2 175.2(7) C1 C17 C18 N2 -5.8(11) C17 C18 C19 C20 -0.6(11) N2 C18 C19 C20 -177.4(7) C18 C19 C20 C21 3.3(13) C19 C20 C21 C22 -3.8(14) C20 C21 C22 C17 1.4(15) C18 C17 C22 C21 1.2(13) C1 C17 C22 C21 -177.9(8) C19 C18 N2 C23 -43.8(11) C17 C18 N2 C23 139.3(8) C18 N2 C23 O2 -0.8(13) C18 N2 C23 C24 -176.0(8)