#------------------------------------------------------------------------------ #$Date: 2016-03-26 14:43:29 +0200 (Sat, 26 Mar 2016) $ #$Revision: 180274 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/11/60/7116086.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7116086 loop_ _publ_author_name 'Hoffknecht, Barbara C.' 'Albada, H. Bauke' 'Sturm, Marina' 'Prochnow, Pascal' 'Bandow, Julia E.' 'Metzler-Nolte, Nils' _publ_section_title ; Synthesis and antibacterial activity of trivalent ultrashort Arg-Trp-based antimicrobial peptides (AMPs) ; _journal_issue 2 _journal_name_full 'Med. Chem. Commun.' _journal_page_first 372 _journal_paper_doi 10.1039/C4MD00327F _journal_volume 6 _journal_year 2015 _chemical_formula_sum 'C15 H21 N9' _chemical_formula_weight 327.41 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2014-09-19 deposited with the CCDC. 2014-11-27 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 101.668(13) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.429(5) _cell_length_b 15.689(9) _cell_length_c 13.238(8) _cell_measurement_temperature 223(2) _cell_volume 1714.5(18) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 223(2) _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.994 _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.1480 _diffrn_reflns_av_sigmaI/netI 0.1278 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 13278 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 2.04 _exptl_absorpt_coefficient_mu 0.084 _exptl_absorpt_correction_T_max 0.9958 _exptl_absorpt_correction_T_min 0.9916 _exptl_crystal_density_diffrn 1.268 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 696 _exptl_crystal_size_max 0.10 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.311 _refine_diff_density_min -0.291 _refine_diff_density_rms 0.083 _refine_ls_extinction_coef 0.119(11) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.140 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 218 _refine_ls_number_reflns 3002 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.140 _refine_ls_R_factor_all 0.1880 _refine_ls_R_factor_gt 0.0986 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0864P)^2^+2.0268P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.2218 _refine_ls_wR_factor_ref 0.2671 _reflns_number_gt 1419 _reflns_number_total 3002 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c4md00327f2.cif _cod_data_source_block 100429t _cod_depositor_comments 'Adding full bibliography for 7116086.cif.' _cod_original_sg_symbol_H-M P2(1)/c _cod_database_code 7116086 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags N5 N -0.0035(7) 0.4021(3) 0.3814(5) 0.0612(15) Uani 1 1 d . C11 C 0.4177(7) 0.0697(4) 0.2897(4) 0.0512(15) Uani 1 1 d . H11A H 0.3256 0.0318 0.2653 0.061 Uiso 1 1 calc R H11B H 0.4562 0.0906 0.2291 0.061 Uiso 1 1 calc R C5 C 0.4402(6) 0.2232(3) 0.3471(3) 0.0379(13) Uani 1 1 d . C2 C 0.1820(6) 0.2069(3) 0.4499(4) 0.0389(13) Uani 1 1 d . C3 C 0.2630(6) 0.2847(3) 0.4498(4) 0.0396(13) Uani 1 1 d . C9 C 0.4747(7) 0.3788(3) 0.3965(4) 0.0471(15) Uani 1 1 d . H9A H 0.3967 0.4246 0.3996 0.057 Uiso 1 1 calc R H9B H 0.5123 0.3849 0.3315 0.057 Uiso 1 1 calc R N8 N 0.6004(6) 0.2934(3) 0.1376(4) 0.0524(13) Uani 1 1 d . N1 N -0.0057(8) 0.0449(4) 0.3216(7) 0.105(2) Uani 1 1 d . C7 C 0.0448(7) 0.1964(4) 0.5078(5) 0.0555(16) Uani 1 1 d . H7A H -0.0297 0.1524 0.4736 0.067 Uiso 1 1 calc R H7B H -0.0157 0.2500 0.5044 0.067 Uiso 1 1 calc R C1 C 0.2345(6) 0.1368(3) 0.3987(4) 0.0409(13) Uani 1 1 d . C4 C 0.3894(6) 0.2933(3) 0.3968(3) 0.0361(13) Uani 1 1 d . N2 N -0.0342(7) 0.0954(5) 0.2535(6) 0.0714(17) Uani 1 1 d . C13 C 0.1470(7) 0.0522(4) 0.3991(5) 0.0585(17) Uani 1 1 d . H13A H 0.2201 0.0064 0.3871 0.070 Uiso 1 1 calc R H13B H 0.1230 0.0434 0.4677 0.070 Uiso 1 1 calc R N9 N 0.6665(8) 0.3289(4) 0.0855(4) 0.0839(19) Uani 1 1 d . C15 C 0.5792(6) 0.2319(4) 0.2920(4) 0.0487(15) Uani 1 1 d . H15A H 0.6528 0.2771 0.3241 0.058 Uiso 1 1 calc R H15B H 0.6402 0.1784 0.2966 0.058 Uiso 1 1 calc R N6 N -0.1161(8) 0.3886(5) 0.3228(5) 0.096(2) Uani 1 1 d . C10 C 0.6190(7) 0.3892(4) 0.4863(4) 0.0609(17) Uani 1 1 d . H10A H 0.6677 0.4448 0.4823 0.091 Uiso 1 1 calc R H10B H 0.6984 0.3452 0.4826 0.091 Uiso 1 1 calc R H10C H 0.5824 0.3843 0.5510 0.091 Uiso 1 1 calc R C14 C 0.2152(7) 0.3598(4) 0.5070(5) 0.0573(16) Uani 1 1 d . H14A H 0.1523 0.3394 0.5568 0.069 Uiso 1 1 calc R H14B H 0.3135 0.3869 0.5459 0.069 Uiso 1 1 calc R N3 N -0.0758(10) 0.1415(7) 0.1905(7) 0.143(4) Uani 1 1 d . N7 N 0.5132(6) 0.2532(4) 0.1824(4) 0.0770(18) Uani 1 1 d . N4 N 0.1181(7) 0.4251(3) 0.4398(6) 0.092(2) Uani 1 1 d . C8 C 0.1036(8) 0.1718(4) 0.6203(5) 0.073(2) Uani 1 1 d . H8A H 0.0114 0.1656 0.6532 0.110 Uiso 1 1 calc R H8B H 0.1749 0.2160 0.6552 0.110 Uiso 1 1 calc R H8C H 0.1621 0.1183 0.6242 0.110 Uiso 1 1 calc R C6 C 0.3606(6) 0.1450(3) 0.3451(4) 0.0381(13) Uani 1 1 d . C12 C 0.5522(7) 0.0193(4) 0.3573(5) 0.0666(18) Uani 1 1 d . H12A H 0.5840 -0.0276 0.3180 0.100 Uiso 1 1 calc R H12B H 0.5139 -0.0030 0.4164 0.100 Uiso 1 1 calc R H12C H 0.6446 0.0562 0.3808 0.100 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N5 0.052(4) 0.056(3) 0.081(4) 0.002(3) 0.028(3) 0.005(3) C11 0.050(4) 0.057(4) 0.045(3) -0.013(3) 0.007(3) 0.001(3) C5 0.041(3) 0.041(3) 0.029(3) 0.002(2) 0.002(2) -0.006(3) C2 0.034(3) 0.041(3) 0.041(3) 0.007(3) 0.008(2) 0.001(3) C3 0.041(3) 0.040(3) 0.038(3) -0.001(2) 0.009(2) 0.004(3) C9 0.059(4) 0.039(3) 0.043(3) 0.000(3) 0.010(3) -0.007(3) N8 0.055(3) 0.060(3) 0.044(3) -0.004(2) 0.016(3) -0.007(3) N1 0.078(5) 0.076(5) 0.140(6) 0.016(5) -0.026(4) -0.042(4) C7 0.041(4) 0.054(4) 0.075(4) 0.005(3) 0.022(3) 0.002(3) C1 0.041(3) 0.033(3) 0.048(3) 0.002(2) 0.007(3) -0.005(3) C4 0.039(3) 0.039(3) 0.028(3) 0.004(2) 0.001(2) -0.007(2) N2 0.052(4) 0.078(5) 0.080(5) -0.015(4) 0.005(3) -0.015(3) C13 0.055(4) 0.043(4) 0.078(4) 0.004(3) 0.015(3) -0.005(3) N9 0.097(5) 0.089(5) 0.068(4) 0.012(3) 0.019(3) -0.025(4) C15 0.048(4) 0.060(4) 0.039(3) 0.001(3) 0.011(3) -0.008(3) N6 0.071(5) 0.119(6) 0.092(5) 0.019(4) 0.004(4) -0.019(4) C10 0.063(4) 0.062(4) 0.056(4) -0.010(3) 0.008(3) -0.026(3) C14 0.053(4) 0.048(4) 0.070(4) -0.009(3) 0.012(3) 0.008(3) N3 0.107(6) 0.174(9) 0.123(7) 0.051(6) -0.037(5) -0.036(6) N7 0.059(3) 0.135(5) 0.039(3) 0.006(3) 0.018(3) -0.032(3) N4 0.069(4) 0.045(3) 0.146(6) -0.018(4) -0.017(4) 0.009(3) C8 0.069(5) 0.080(5) 0.081(5) 0.020(4) 0.037(4) 0.002(4) C6 0.041(3) 0.040(3) 0.032(3) -0.002(2) 0.003(2) -0.004(3) C12 0.072(4) 0.057(4) 0.068(4) -0.010(3) 0.010(3) 0.014(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N6 N5 N4 173.0(7) C12 C11 C6 113.1(4) C12 C11 H11A 109.0 C6 C11 H11A 109.0 C12 C11 H11B 109.0 C6 C11 H11B 109.0 H11A C11 H11B 107.8 C4 C5 C6 120.7(5) C4 C5 C15 120.0(5) C6 C5 C15 119.3(5) C3 C2 C1 118.7(5) C3 C2 C7 121.1(5) C1 C2 C7 120.2(5) C4 C3 C2 120.5(5) C4 C3 C14 119.3(5) C2 C3 C14 120.3(5) C4 C9 C10 113.2(4) C4 C9 H9A 108.9 C10 C9 H9A 108.9 C4 C9 H9B 108.9 C10 C9 H9B 108.9 H9A C9 H9B 107.7 N9 N8 N7 171.3(6) N2 N1 C13 119.2(6) C2 C7 C8 113.0(5) C2 C7 H7A 109.0 C8 C7 H7A 109.0 C2 C7 H7B 109.0 C8 C7 H7B 109.0 H7A C7 H7B 107.8 C6 C1 C2 121.1(5) C6 C1 C13 120.1(5) C2 C1 C13 118.7(5) C5 C4 C3 120.0(5) C5 C4 C9 120.3(5) C3 C4 C9 119.7(5) N3 N2 N1 173.3(8) N1 C13 C1 114.9(5) N1 C13 H13A 108.5 C1 C13 H13A 108.5 N1 C13 H13B 108.5 C1 C13 H13B 108.5 H13A C13 H13B 107.5 N7 C15 C5 108.6(4) N7 C15 H15A 110.0 C5 C15 H15A 110.0 N7 C15 H15B 110.0 C5 C15 H15B 110.0 H15A C15 H15B 108.3 C9 C10 H10A 109.5 C9 C10 H10B 109.5 H10A C10 H10B 109.5 C9 C10 H10C 109.5 H10A C10 H10C 109.5 H10B C10 H10C 109.5 N4 C14 C3 114.3(5) N4 C14 H14A 108.7 C3 C14 H14A 108.7 N4 C14 H14B 108.7 C3 C14 H14B 108.7 H14A C14 H14B 107.6 N8 N7 C15 116.8(5) N5 N4 C14 118.0(5) C7 C8 H8A 109.5 C7 C8 H8B 109.5 H8A C8 H8B 109.5 C7 C8 H8C 109.5 H8A C8 H8C 109.5 H8B C8 H8C 109.5 C5 C6 C1 118.9(5) C5 C6 C11 119.6(5) C1 C6 C11 121.4(5) C11 C12 H12A 109.5 C11 C12 H12B 109.5 H12A C12 H12B 109.5 C11 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N5 N6 1.118(7) N5 N4 1.208(8) C11 C12 1.518(8) C11 C6 1.519(7) C11 H11A 0.9800 C11 H11B 0.9800 C5 C4 1.393(7) C5 C6 1.395(7) C5 C15 1.507(7) C2 C3 1.399(7) C2 C1 1.409(7) C2 C7 1.521(7) C3 C4 1.396(7) C3 C14 1.499(7) C9 C4 1.522(7) C9 C10 1.528(7) C9 H9A 0.9800 C9 H9B 0.9800 N8 N9 1.119(7) N8 N7 1.211(7) N1 N2 1.189(8) N1 C13 1.479(8) C7 C8 1.521(8) C7 H7A 0.9800 C7 H7B 0.9800 C1 C6 1.397(7) C1 C13 1.519(7) N2 N3 1.105(9) C13 H13A 0.9800 C13 H13B 0.9800 C15 N7 1.484(7) C15 H15A 0.9800 C15 H15B 0.9800 C10 H10A 0.9700 C10 H10B 0.9700 C10 H10C 0.9700 C14 N4 1.488(8) C14 H14A 0.9800 C14 H14B 0.9800 C8 H8A 0.9700 C8 H8B 0.9700 C8 H8C 0.9700 C12 H12A 0.9700 C12 H12B 0.9700 C12 H12C 0.9700