#------------------------------------------------------------------------------ #$Date: 2020-06-05 14:27:29 +0300 (Fri, 05 Jun 2020) $ #$Revision: 252906 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/15/74/7157466.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7157466 loop_ _publ_author_name 'Kim, Woo Gyum' 'Baek, Seung-Yeol' 'Jeong, Seo Yeong' 'Nam, Dongsik' 'Jeon, Ji Hwan' 'Choe, Wonyoung' 'Baik, Mu-Hyun' 'Hong, Sung You' _publ_section_title ; Chemo- and regioselective click reactions through nickel-catalyzed azide-alkyne cycloaddition. ; _journal_issue 17 _journal_name_full 'Organic & biomolecular chemistry' _journal_page_first 3374 _journal_page_last 3381 _journal_paper_doi 10.1039/d0ob00579g _journal_volume 18 _journal_year 2020 _chemical_formula_sum 'C16 H11 N5 O2' _chemical_formula_weight 305.30 _chemical_name_systematic 5ad _space_group_crystal_system monoclinic _space_group_IT_number 4 _space_group_name_Hall 'P 2yb' _space_group_name_H-M_alt 'P 1 21 1' _atom_sites_solution_hydrogens geom _audit_creation_method SHELXL-2014/7 _audit_update_record ; 2019-12-05 deposited with the CCDC. 2020-04-15 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 102.83(3) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 7.1117(14) _cell_length_b 14.251(3) _cell_length_c 7.5497(15) _cell_measurement_reflns_used 3389 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 27.468 _cell_measurement_theta_min 3.115 _cell_volume 746.0(3) _computing_cell_refinement 'Rigaku Rapid Auto' _computing_data_collection 'Rigaku Rapid Auto' _computing_data_reduction 'Rigaku Rapid Auto' _computing_molecular_graphics ORTEP _computing_publication_material CIFTAB _computing_structure_refinement SHELXL _computing_structure_solution SHELXS _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'imaging plate' _diffrn_measurement_method 'omega scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0182 _diffrn_reflns_av_unetI/netI 0.0269 _diffrn_reflns_Laue_measured_fraction_full 0.998 _diffrn_reflns_Laue_measured_fraction_max 0.997 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 7109 _diffrn_reflns_point_group_measured_fraction_full 0.996 _diffrn_reflns_point_group_measured_fraction_max 0.995 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 27.468 _diffrn_reflns_theta_min 3.115 _diffrn_source 'fine-focus sealed tube' _exptl_absorpt_coefficient_mu 0.095 _exptl_absorpt_correction_T_max 0.988 _exptl_absorpt_correction_T_min 0.935 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Rigaku Rapid Auto' _exptl_crystal_colour Colorless _exptl_crystal_density_diffrn 1.359 _exptl_crystal_description Block _exptl_crystal_F_000 316 _exptl_crystal_size_max 0.720 _exptl_crystal_size_mid 0.220 _exptl_crystal_size_min 0.130 _refine_diff_density_max 0.103 _refine_diff_density_min -0.156 _refine_diff_density_rms 0.022 _refine_ls_abs_structure_details ; Flack x determined using 888 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). ; _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.030 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 208 _refine_ls_number_reflns 3389 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.030 _refine_ls_R_factor_all 0.0631 _refine_ls_R_factor_gt 0.0401 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0306P)^2^+0.0435P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0721 _refine_ls_wR_factor_ref 0.0777 _reflns_Friedel_coverage 0.918 _reflns_Friedel_fraction_full 0.995 _reflns_Friedel_fraction_max 0.992 _reflns_number_gt 2490 _reflns_number_total 3389 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file d0ob00579g2.cif _cod_data_source_block P21_a _cod_depositor_comments 'Adding full bibliography for 7157466--7157469.cif.' _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 7157466 _shelx_shelxl_version_number 2014/7 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_res_file ; P21_a.res created by SHELXL-2014/7 TITL P21_a.res in P2(1) CELL 0.71073 7.1117 14.2512 7.5497 90.000 102.835 90.000 ZERR 2.000 0.0014 0.0029 0.0015 0.000 0.030 0.000 LATT -1 SYMM -X, 1/2+Y, -Z SFAC C H N O UNIT 32 22 10 4 L.S. 24 ACTA BOND $H FMAP 2 PLAN 2 LIST 6 SIZE 0.72 0.22 0.13 TEMP 25 WGHT 0.030600 0.043500 FVAR 1.06846 C1 1 0.581410 0.518775 0.151282 11.00000 0.07134 0.04005 = 0.04234 -0.00131 0.01326 0.00844 C2 1 0.595237 0.450632 0.300398 11.00000 0.05400 0.04395 = 0.04074 -0.00023 0.00910 0.00833 C3 1 0.636432 0.478955 0.481733 11.00000 0.06842 0.04391 = 0.04528 -0.00487 0.00958 -0.00062 AFIX 43 H3 2 0.650474 0.542376 0.510670 11.00000 -1.20000 AFIX 0 C4 1 0.656330 0.412941 0.618062 11.00000 0.06478 0.05994 = 0.03642 -0.00160 0.00840 -0.00473 AFIX 43 H4 2 0.686809 0.430921 0.739499 11.00000 -1.20000 AFIX 0 C5 1 0.630170 0.320035 0.570667 11.00000 0.04704 0.05188 = 0.04542 0.00895 0.01046 0.00015 C6 1 0.583628 0.290049 0.393962 11.00000 0.06402 0.03981 = 0.05486 -0.00314 0.01395 -0.00151 AFIX 43 H6 2 0.563847 0.226723 0.366264 11.00000 -1.20000 AFIX 0 C7 1 0.566951 0.356074 0.258694 11.00000 0.06512 0.05116 = 0.03970 -0.00597 0.00750 0.00192 AFIX 43 H7 2 0.536354 0.337188 0.137777 11.00000 -1.20000 AFIX 0 C8 1 0.435927 0.534645 0.000735 11.00000 0.09090 0.04968 = 0.03627 0.00048 0.00613 0.00978 C9 1 0.248720 0.493936 -0.039182 11.00000 0.09530 0.05966 = 0.04743 -0.00221 -0.00876 0.01154 C10 1 0.910910 0.597726 0.247747 11.00000 0.06929 0.06726 = 0.08637 0.00517 0.02155 0.00105 AFIX 23 H10A 2 0.998466 0.615283 0.171503 11.00000 -1.20000 H10B 2 0.958511 0.539942 0.309659 11.00000 -1.20000 AFIX 0 C11 1 0.913192 0.673416 0.387435 11.00000 0.05577 0.06514 = 0.06828 0.00810 0.01828 -0.00745 C12 1 0.857610 0.764386 0.337132 11.00000 0.06609 0.06971 = 0.07459 0.00328 0.01270 -0.00504 AFIX 43 H12 2 0.815963 0.779195 0.214709 11.00000 -1.20000 AFIX 0 C13 1 0.863167 0.832752 0.465178 11.00000 0.07175 0.07762 = 0.10886 -0.01550 0.02003 -0.00554 AFIX 43 H13 2 0.824914 0.893568 0.429590 11.00000 -1.20000 AFIX 0 C14 1 0.925083 0.811783 0.646080 11.00000 0.07688 0.12191 = 0.09929 -0.03772 0.03703 -0.03484 AFIX 43 H14 2 0.927513 0.858151 0.733238 11.00000 -1.20000 AFIX 0 C15 1 0.983647 0.721906 0.698365 11.00000 0.10941 0.13248 = 0.06691 -0.00306 0.01908 -0.04570 AFIX 43 H15 2 1.026950 0.707541 0.820816 11.00000 -1.20000 AFIX 0 C16 1 0.977910 0.654214 0.570192 11.00000 0.09262 0.08465 = 0.07226 0.01645 0.00256 -0.02154 AFIX 43 H16 2 1.018400 0.593757 0.606370 11.00000 -1.20000 AFIX 0 N1 3 0.490225 0.602454 -0.103582 11.00000 0.12030 0.06023 = 0.04933 0.00985 0.01194 0.00902 N2 3 0.663595 0.630405 -0.024441 11.00000 0.11119 0.06719 = 0.06147 0.01772 0.02385 0.00154 N3 3 0.719392 0.580304 0.131693 11.00000 0.08062 0.05409 = 0.05517 0.00766 0.01781 0.00338 N4 3 0.654098 0.248547 0.715744 11.00000 0.06840 0.07392 = 0.06134 0.01981 0.01725 -0.00438 N5 3 0.097026 0.463222 -0.066414 11.00000 0.10059 0.10235 = 0.08122 -0.00572 -0.01509 -0.00744 O1 4 0.635029 0.166158 0.673204 11.00000 0.11231 0.05935 = 0.09515 0.02641 0.02745 -0.00896 O2 4 0.696407 0.275669 0.872138 11.00000 0.17568 0.10980 = 0.04935 0.02250 0.01582 -0.01396 HKLF 4 REM P21_a.res in P2(1) REM R1 = 0.0401 for 2490 Fo > 4sig(Fo) and 0.0631 for all 3389 data REM 208 parameters refined using 1 restraints END WGHT 0.0306 0.0434 REM Highest difference peak 0.103, deepest hole -0.156, 1-sigma level 0.022 Q1 1 0.8649 0.6322 0.3327 11.00000 0.05 0.10 Q2 1 0.5658 0.4952 0.2434 11.00000 0.05 0.10 ; _shelx_res_checksum 21236 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group C1 C 0.5814(4) 0.51877(17) 0.1513(3) 0.0511(6) Uani 1 1 d . . . . . C2 C 0.5952(3) 0.45063(16) 0.3004(3) 0.0465(5) Uani 1 1 d . . . . . C3 C 0.6364(4) 0.47896(17) 0.4817(3) 0.0530(6) Uani 1 1 d . . . . . H3 H 0.6505 0.5424 0.5107 0.064 Uiso 1 1 calc R U . . . C4 C 0.6563(4) 0.41294(17) 0.6181(3) 0.0542(6) Uani 1 1 d . . . . . H4 H 0.6868 0.4309 0.7395 0.065 Uiso 1 1 calc R U . . . C5 C 0.6302(3) 0.32004(18) 0.5707(3) 0.0481(6) Uani 1 1 d . . . . . C6 C 0.5836(4) 0.29005(17) 0.3940(3) 0.0528(6) Uani 1 1 d . . . . . H6 H 0.5638 0.2267 0.3663 0.063 Uiso 1 1 calc R U . . . C7 C 0.5670(3) 0.35607(16) 0.2587(3) 0.0526(6) Uani 1 1 d . . . . . H7 H 0.5364 0.3372 0.1378 0.063 Uiso 1 1 calc R U . . . C8 C 0.4359(4) 0.53464(17) 0.0007(3) 0.0602(7) Uani 1 1 d . . . . . C9 C 0.2487(6) 0.49394(19) -0.0392(4) 0.0713(8) Uani 1 1 d . . . . . C10 C 0.9109(4) 0.5977(2) 0.2477(4) 0.0736(8) Uani 1 1 d . . . . . H10A H 0.9985 0.6153 0.1715 0.088 Uiso 1 1 calc R U . . . H10B H 0.9585 0.5399 0.3097 0.088 Uiso 1 1 calc R U . . . C11 C 0.9132(4) 0.6734(2) 0.3874(4) 0.0624(7) Uani 1 1 d . . . . . C12 C 0.8576(4) 0.7644(2) 0.3371(4) 0.0706(8) Uani 1 1 d . . . . . H12 H 0.8160 0.7792 0.2147 0.085 Uiso 1 1 calc R U . . . C13 C 0.8632(5) 0.8328(2) 0.4652(5) 0.0861(10) Uani 1 1 d . . . . . H13 H 0.8249 0.8936 0.4296 0.103 Uiso 1 1 calc R U . . . C14 C 0.9251(5) 0.8118(3) 0.6461(6) 0.0966(12) Uani 1 1 d . . . . . H14 H 0.9275 0.8582 0.7332 0.116 Uiso 1 1 calc R U . . . C15 C 0.9836(6) 0.7219(3) 0.6984(5) 0.1030(12) Uani 1 1 d . . . . . H15 H 1.0269 0.7075 0.8208 0.124 Uiso 1 1 calc R U . . . C16 C 0.9779(5) 0.6542(2) 0.5702(4) 0.0856(10) Uani 1 1 d . . . . . H16 H 1.0184 0.5938 0.6064 0.103 Uiso 1 1 calc R U . . . N1 N 0.4902(4) 0.60245(16) -0.1036(3) 0.0777(7) Uani 1 1 d . . . . . N2 N 0.6636(4) 0.63040(17) -0.0244(3) 0.0792(7) Uani 1 1 d . . . . . N3 N 0.7194(3) 0.58030(15) 0.1317(3) 0.0629(6) Uani 1 1 d . . . . . N4 N 0.6541(3) 0.24855(18) 0.7157(3) 0.0674(7) Uani 1 1 d . . . . . N5 N 0.0970(5) 0.4632(2) -0.0664(4) 0.1002(10) Uani 1 1 d . . . . . O1 O 0.6350(3) 0.16616(15) 0.6732(3) 0.0883(7) Uani 1 1 d . . . . . O2 O 0.6964(4) 0.27567(19) 0.8721(3) 0.1130(9) Uani 1 1 d . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0713(17) 0.0400(12) 0.0423(13) -0.0013(10) 0.0133(11) 0.0084(12) C2 0.0540(14) 0.0439(12) 0.0407(12) -0.0002(10) 0.0091(10) 0.0083(11) C3 0.0684(16) 0.0439(13) 0.0453(13) -0.0049(11) 0.0096(11) -0.0006(11) C4 0.0648(17) 0.0599(15) 0.0364(12) -0.0016(12) 0.0084(11) -0.0047(12) C5 0.0470(14) 0.0519(13) 0.0454(13) 0.0089(10) 0.0105(10) 0.0002(11) C6 0.0640(16) 0.0398(12) 0.0549(15) -0.0031(11) 0.0139(12) -0.0015(12) C7 0.0651(16) 0.0512(14) 0.0397(13) -0.0060(12) 0.0075(11) 0.0019(12) C8 0.091(2) 0.0497(14) 0.0363(12) 0.0005(11) 0.0061(12) 0.0098(14) C9 0.095(2) 0.0597(17) 0.0474(15) -0.0022(12) -0.0088(15) 0.0115(16) C10 0.0693(19) 0.0673(18) 0.086(2) 0.0052(16) 0.0216(16) 0.0010(15) C11 0.0558(16) 0.0651(16) 0.0683(17) 0.0081(14) 0.0183(12) -0.0074(13) C12 0.0661(18) 0.070(2) 0.0746(18) 0.0033(16) 0.0127(15) -0.0050(14) C13 0.072(2) 0.078(2) 0.109(3) -0.016(2) 0.0200(19) -0.0055(17) C14 0.077(2) 0.122(3) 0.099(3) -0.038(2) 0.037(2) -0.035(2) C15 0.109(3) 0.132(4) 0.067(2) -0.003(2) 0.0191(18) -0.046(3) C16 0.093(2) 0.085(2) 0.072(2) 0.0164(18) 0.0026(17) -0.0215(18) N1 0.120(2) 0.0602(14) 0.0493(13) 0.0098(11) 0.0119(13) 0.0090(14) N2 0.111(2) 0.0672(15) 0.0615(15) 0.0177(12) 0.0238(15) 0.0015(14) N3 0.0806(16) 0.0541(12) 0.0552(12) 0.0077(10) 0.0178(11) 0.0034(12) N4 0.0684(15) 0.0739(17) 0.0613(16) 0.0198(13) 0.0172(11) -0.0044(12) N5 0.101(2) 0.102(2) 0.0812(19) -0.0057(16) -0.0151(16) -0.0074(19) O1 0.1123(17) 0.0593(12) 0.0951(15) 0.0264(12) 0.0274(12) -0.0090(12) O2 0.176(3) 0.1098(19) 0.0494(13) 0.0225(13) 0.0158(13) -0.0140(17) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag N3 C1 C8 103.6(2) . . ? N3 C1 C2 125.9(2) . . ? C8 C1 C2 130.6(2) . . ? C7 C2 C3 119.5(2) . . ? C7 C2 C1 119.0(2) . . ? C3 C2 C1 121.5(2) . . ? C4 C3 C2 120.0(2) . . ? C4 C3 H3 120.0 . . ? C2 C3 H3 120.0 . . ? C5 C4 C3 118.6(2) . . ? C5 C4 H4 120.7 . . ? C3 C4 H4 120.7 . . ? C6 C5 C4 123.0(2) . . ? C6 C5 N4 118.0(2) . . ? C4 C5 N4 119.0(2) . . ? C5 C6 C7 118.2(2) . . ? C5 C6 H6 120.9 . . ? C7 C6 H6 120.9 . . ? C6 C7 C2 120.8(2) . . ? C6 C7 H7 119.6 . . ? C2 C7 H7 119.6 . . ? N1 C8 C1 109.8(3) . . ? N1 C8 C9 122.8(2) . . ? C1 C8 C9 127.2(2) . . ? N5 C9 C8 177.6(3) . . ? N3 C10 C11 113.8(2) . . ? N3 C10 H10A 108.8 . . ? C11 C10 H10A 108.8 . . ? N3 C10 H10B 108.8 . . ? C11 C10 H10B 108.8 . . ? H10A C10 H10B 107.7 . . ? C16 C11 C12 118.1(3) . . ? C16 C11 C10 120.5(3) . . ? C12 C11 C10 121.4(3) . . ? C13 C12 C11 120.8(3) . . ? C13 C12 H12 119.6 . . ? C11 C12 H12 119.6 . . ? C12 C13 C14 120.1(4) . . ? C12 C13 H13 120.0 . . ? C14 C13 H13 120.0 . . ? C13 C14 C15 119.9(4) . . ? C13 C14 H14 120.1 . . ? C15 C14 H14 120.1 . . ? C16 C15 C14 119.7(3) . . ? C16 C15 H15 120.1 . . ? C14 C15 H15 120.1 . . ? C15 C16 C11 121.4(3) . . ? C15 C16 H16 119.3 . . ? C11 C16 H16 119.3 . . ? N2 N1 C8 108.2(2) . . ? N1 N2 N3 107.5(2) . . ? C1 N3 N2 110.9(2) . . ? C1 N3 C10 130.2(2) . . ? N2 N3 C10 118.8(2) . . ? O2 N4 O1 123.5(3) . . ? O2 N4 C5 117.6(3) . . ? O1 N4 C5 118.8(2) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C1 N3 1.348(3) . ? C1 C8 1.375(3) . ? C1 C2 1.473(3) . ? C2 C7 1.388(3) . ? C2 C3 1.395(3) . ? C3 C4 1.378(3) . ? C3 H3 0.9300 . ? C4 C5 1.373(3) . ? C4 H4 0.9300 . ? C5 C6 1.370(3) . ? C5 N4 1.478(3) . ? C6 C7 1.374(3) . ? C6 H6 0.9300 . ? C7 H7 0.9300 . ? C8 N1 1.356(3) . ? C8 C9 1.422(5) . ? C9 N5 1.140(4) . ? C10 N3 1.468(3) . ? C10 C11 1.506(4) . ? C10 H10A 0.9700 . ? C10 H10B 0.9700 . ? C11 C16 1.381(4) . ? C11 C12 1.384(4) . ? C12 C13 1.367(4) . ? C12 H12 0.9300 . ? C13 C14 1.372(5) . ? C13 H13 0.9300 . ? C14 C15 1.377(6) . ? C14 H14 0.9300 . ? C15 C16 1.361(5) . ? C15 H15 0.9300 . ? C16 H16 0.9300 . ? N1 N2 1.307(3) . ? N2 N3 1.360(3) . ? N4 O2 1.215(3) . ? N4 O1 1.217(3) . ?