#------------------------------------------------------------------------------ #$Date: 2020-05-12 06:54:16 +0300 (Tue, 12 May 2020) $ #$Revision: 251979 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/15/74/7157498.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7157498 loop_ _publ_author_name 'Mondal, Santa' 'Mahato, Karuna' 'Arora, Neha' 'Kankane, Dheerendra' 'Singh, Umed Pratap' 'Ali, Saghir' 'Khan, Aftab Hossain' 'Ghosh, Siddhartha Sankar' 'Khan, Abu Taleb' _publ_section_title ; Newly Synthesized 3-Sulfenylindole Derivatives from 4-Hydroxydithiocoumarin using Oxidative Cross Dehydrogenative Coupling Reaction (OCDCR): Potential Lead Molecules for Antiproliferative Activity† ; _journal_name_full 'Organic & Biomolecular Chemistry' _journal_paper_doi 10.1039/D0OB00054J _journal_year 2020 _chemical_formula_sum 'C17 H11 N O S2' _chemical_formula_weight 309.39 _space_group_crystal_system monoclinic _space_group_IT_number 15 _space_group_name_Hall '-C 2yc' _space_group_name_H-M_alt 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _audit_creation_method SHELXL-2014/7 _audit_update_record ; 2018-12-27 deposited with the CCDC. 2020-05-11 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 92.715(6) _cell_angle_gamma 90 _cell_formula_units_Z 8 _cell_length_a 17.5086(10) _cell_length_b 11.7781(8) _cell_length_c 13.9721(9) _cell_measurement_reflns_used 1793 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 27.4870 _cell_measurement_theta_min 3.4530 _cell_volume 2878.1(3) _computing_structure_refinement 'SHELXL-2014/7 (Sheldrick, 2014)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0186 _diffrn_reflns_av_unetI/netI 0.0306 _diffrn_reflns_Laue_measured_fraction_full 0.998 _diffrn_reflns_Laue_measured_fraction_max 0.998 _diffrn_reflns_limit_h_max 20 _diffrn_reflns_limit_h_min -20 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -16 _diffrn_reflns_number 5445 _diffrn_reflns_point_group_measured_fraction_full 0.998 _diffrn_reflns_point_group_measured_fraction_max 0.998 _diffrn_reflns_theta_full 25.048 _diffrn_reflns_theta_max 25.048 _diffrn_reflns_theta_min 2.919 _exptl_absorpt_coefficient_mu 0.366 _exptl_crystal_colour brown _exptl_crystal_density_diffrn 1.428 _exptl_crystal_description block _exptl_crystal_F_000 1280 _refine_diff_density_max 0.645 _refine_diff_density_min -0.215 _refine_diff_density_rms 0.050 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.998 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 190 _refine_ls_number_reflns 2550 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.998 _refine_ls_R_factor_all 0.0592 _refine_ls_R_factor_gt 0.0461 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0847P)^2^+2.0019P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1283 _refine_ls_wR_factor_ref 0.1450 _reflns_Friedel_coverage 0.000 _reflns_number_gt 2015 _reflns_number_total 2550 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file d0ob00054j2.cif _cod_data_source_block exp_5347 _cod_original_sg_symbol_H-M 'C 2/c' _cod_database_code 7157498 _shelx_shelxl_version_number 2014/7 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_res_file ; exp_5347.res created by SHELXL-2014/7 TITL exp_5347_a.res in C2/c CELL 0.71073 17.5086 11.7781 13.9721 90 92.715 90 ZERR 8 0.001 0.0008 0.0009 0 0.006 0 LATT 7 SYMM -X,+Y,0.5-Z SFAC C H N S O UNIT 136 88 8 16 8 OMIT -3 50.1 L.S. 20 ACTA BOND $H FMAP 2 PLAN 5 WGHT 0.084700 2.001900 FVAR 0.31130 S1 4 0.652483 0.584319 0.553079 11.00000 0.03379 0.05667 = 0.06061 0.01130 0.01318 0.00778 S11 4 0.592007 0.424850 0.694199 11.00000 0.04029 0.06062 = 0.06054 0.01150 0.01684 0.00607 O 5 0.414259 0.715686 0.547074 11.00000 0.04261 0.09908 = 0.07924 0.00505 0.00941 0.02763 N20 3 0.796363 0.306556 0.652845 11.00000 0.04913 0.06746 = 0.06981 0.00201 0.01433 0.01839 AFIX 43 H20 2 0.827657 0.264437 0.623180 11.00000 -1.20000 AFIX 0 C2 1 0.576152 0.541021 0.616776 11.00000 0.03615 0.04875 = 0.04277 -0.00570 0.00839 0.00300 C13 1 0.689464 0.394758 0.689277 11.00000 0.04133 0.04670 = 0.04876 0.00846 0.01173 0.00634 C10 1 0.612795 0.692852 0.482248 11.00000 0.04436 0.04208 = 0.04626 -0.00500 0.00339 0.00268 C5 1 0.536614 0.728752 0.483193 11.00000 0.04351 0.04801 = 0.04820 -0.00219 -0.00157 0.00524 C14 1 0.748914 0.428082 0.758089 11.00000 0.04679 0.04478 = 0.04962 0.01141 0.00772 -0.00134 C12 1 0.720707 0.320871 0.627697 11.00000 0.04882 0.05937 = 0.05513 0.00186 0.00523 0.01040 AFIX 43 H12 2 0.694638 0.285514 0.576377 11.00000 -1.20000 AFIX 0 C3 1 0.504837 0.587767 0.609235 11.00000 0.03356 0.06815 = 0.05359 0.00147 0.01150 0.00188 AFIX 43 H3 2 0.468278 0.557561 0.648150 11.00000 -1.20000 AFIX 0 C4 1 0.481218 0.678187 0.547555 11.00000 0.03882 0.06196 = 0.05026 -0.00576 0.00122 0.01146 C9 1 0.663146 0.745140 0.420283 11.00000 0.05129 0.05219 = 0.05476 -0.00218 0.00948 -0.00124 AFIX 43 H9 2 0.713619 0.720736 0.419301 11.00000 -1.20000 AFIX 0 C19 1 0.814437 0.369826 0.732671 11.00000 0.04762 0.05133 = 0.06218 0.01671 0.00400 0.00015 C6 1 0.513121 0.815991 0.421171 11.00000 0.05641 0.06145 = 0.07454 0.01006 -0.00569 0.00915 AFIX 43 H6 2 0.462532 0.840219 0.420027 11.00000 -1.20000 AFIX 0 C15 1 0.752114 0.497723 0.839630 11.00000 0.07843 0.05400 = 0.06155 0.00426 0.00569 -0.00708 AFIX 43 H15 2 0.709330 0.538190 0.857059 11.00000 -1.20000 AFIX 0 C8 1 0.638260 0.831667 0.361482 11.00000 0.08017 0.06554 = 0.05901 0.01136 0.00792 -0.01085 AFIX 43 H8 2 0.671812 0.866937 0.321252 11.00000 -1.20000 AFIX 0 C18 1 0.883444 0.377204 0.787353 11.00000 0.05188 0.06641 = 0.10144 0.02763 -0.00716 -0.00163 AFIX 43 H18 2 0.927022 0.338557 0.770099 11.00000 -1.20000 AFIX 0 C7 1 0.562663 0.866430 0.362274 11.00000 0.07888 0.07047 = 0.07282 0.02209 -0.00978 0.00065 AFIX 43 H7 2 0.545598 0.924972 0.322033 11.00000 -1.20000 AFIX 0 C17 1 0.883493 0.444623 0.868008 11.00000 0.09147 0.07100 = 0.10319 0.02899 -0.03872 -0.02642 AFIX 43 H17 2 0.927947 0.449816 0.906910 11.00000 -1.20000 AFIX 0 C16 1 0.819527 0.504841 0.892976 11.00000 0.10457 0.06701 = 0.07406 0.00940 -0.01694 -0.02227 AFIX 43 H16 2 0.822423 0.551007 0.947025 11.00000 -1.20000 AFIX 0 HKLF 4 REM exp_5347_a.res in C2/c REM R1 = 0.0461 for 2015 Fo > 4sig(Fo) and 0.0592 for all 2550 data REM 190 parameters refined using 0 restraints END WGHT 0.0703 2.5148 REM Highest difference peak 0.645, deepest hole -0.215, 1-sigma level 0.050 Q1 1 0.6369 0.6008 0.6240 11.00000 0.05 0.65 Q2 1 0.4309 0.5242 0.7059 11.00000 0.05 0.64 Q3 1 0.5163 0.7065 0.5097 11.00000 0.05 0.24 Q4 1 0.6143 0.6422 0.5171 11.00000 0.05 0.22 Q5 1 0.6479 0.7772 0.3838 11.00000 0.05 0.21 ; _shelx_res_checksum 92233 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group S1 S 0.65248(4) 0.58432(6) 0.55308(5) 0.0500(3) Uani 1 1 d . . . . . S11 S 0.59201(4) 0.42485(7) 0.69420(5) 0.0534(3) Uani 1 1 d . . . . . O O 0.41426(11) 0.7157(2) 0.54707(15) 0.0734(7) Uani 1 1 d . . . . . N20 N 0.79636(14) 0.3066(2) 0.65285(18) 0.0618(7) Uani 1 1 d . . . . . H20 H 0.8277 0.2644 0.6232 0.074 Uiso 1 1 calc R U . . . C2 C 0.57615(13) 0.5410(2) 0.61678(17) 0.0423(6) Uani 1 1 d . . . . . C13 C 0.68946(15) 0.3948(2) 0.68928(18) 0.0453(6) Uani 1 1 d . . . . . C10 C 0.61279(14) 0.6929(2) 0.48225(17) 0.0442(6) Uani 1 1 d . . . . . C5 C 0.53661(14) 0.7288(2) 0.48319(18) 0.0467(6) Uani 1 1 d . . . . . C14 C 0.74891(16) 0.4281(2) 0.75809(19) 0.0469(6) Uani 1 1 d . . . . . C12 C 0.72071(16) 0.3209(3) 0.6277(2) 0.0543(7) Uani 1 1 d . . . . . H12 H 0.6946 0.2855 0.5764 0.065 Uiso 1 1 calc R U . . . C3 C 0.50484(15) 0.5878(3) 0.60924(19) 0.0515(7) Uani 1 1 d . . . . . H3 H 0.4683 0.5576 0.6482 0.062 Uiso 1 1 calc R U . . . C4 C 0.48122(15) 0.6782(3) 0.54756(19) 0.0504(7) Uani 1 1 d . . . . . C9 C 0.66315(17) 0.7451(2) 0.42028(19) 0.0525(7) Uani 1 1 d . . . . . H9 H 0.7136 0.7207 0.4193 0.063 Uiso 1 1 calc R U . . . C19 C 0.81444(16) 0.3698(3) 0.7327(2) 0.0537(7) Uani 1 1 d . . . . . C6 C 0.51312(19) 0.8160(3) 0.4212(2) 0.0644(8) Uani 1 1 d . . . . . H6 H 0.4625 0.8402 0.4200 0.077 Uiso 1 1 calc R U . . . C15 C 0.7521(2) 0.4977(3) 0.8396(2) 0.0646(8) Uani 1 1 d . . . . . H15 H 0.7093 0.5382 0.8571 0.077 Uiso 1 1 calc R U . . . C8 C 0.6383(2) 0.8317(3) 0.3615(2) 0.0681(9) Uani 1 1 d . . . . . H8 H 0.6718 0.8669 0.3213 0.082 Uiso 1 1 calc R U . . . C18 C 0.88344(19) 0.3772(3) 0.7874(3) 0.0736(10) Uani 1 1 d . . . . . H18 H 0.9270 0.3386 0.7701 0.088 Uiso 1 1 calc R U . . . C7 C 0.5627(2) 0.8664(3) 0.3623(2) 0.0745(10) Uani 1 1 d . . . . . H7 H 0.5456 0.9250 0.3220 0.089 Uiso 1 1 calc R U . . . C17 C 0.8835(3) 0.4446(4) 0.8680(3) 0.0899(13) Uani 1 1 d . . . . . H17 H 0.9279 0.4498 0.9069 0.108 Uiso 1 1 calc R U . . . C16 C 0.8195(3) 0.5048(3) 0.8930(3) 0.0825(11) Uani 1 1 d . . . . . H16 H 0.8224 0.5510 0.9470 0.099 Uiso 1 1 calc R U . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0338(4) 0.0567(5) 0.0606(5) 0.0113(3) 0.0132(3) 0.0078(3) S11 0.0403(4) 0.0606(5) 0.0605(5) 0.0115(3) 0.0168(3) 0.0061(3) O 0.0426(12) 0.0991(18) 0.0792(14) 0.0050(13) 0.0094(10) 0.0276(12) N20 0.0491(14) 0.0675(17) 0.0698(15) 0.0020(14) 0.0143(11) 0.0184(12) C2 0.0361(13) 0.0487(15) 0.0428(13) -0.0057(11) 0.0084(10) 0.0030(11) C13 0.0413(14) 0.0467(15) 0.0488(14) 0.0085(12) 0.0117(11) 0.0063(12) C10 0.0444(14) 0.0421(15) 0.0463(14) -0.0050(12) 0.0034(11) 0.0027(11) C5 0.0435(14) 0.0480(16) 0.0482(14) -0.0022(12) -0.0016(11) 0.0052(12) C14 0.0468(15) 0.0448(15) 0.0496(14) 0.0114(12) 0.0077(11) -0.0013(12) C12 0.0488(16) 0.0594(18) 0.0551(15) 0.0019(14) 0.0052(12) 0.0104(14) C3 0.0336(14) 0.0682(19) 0.0536(15) 0.0015(14) 0.0115(11) 0.0019(12) C4 0.0388(14) 0.0620(18) 0.0503(14) -0.0058(13) 0.0012(11) 0.0115(13) C9 0.0513(16) 0.0522(17) 0.0548(16) -0.0022(13) 0.0095(12) -0.0012(13) C19 0.0476(16) 0.0513(17) 0.0622(17) 0.0167(15) 0.0040(13) 0.0002(13) C6 0.0564(18) 0.061(2) 0.075(2) 0.0101(17) -0.0057(15) 0.0092(15) C15 0.078(2) 0.0540(19) 0.0615(18) 0.0043(15) 0.0057(15) -0.0071(16) C8 0.080(2) 0.066(2) 0.0590(18) 0.0114(16) 0.0079(16) -0.0109(18) C18 0.0519(19) 0.066(2) 0.101(3) 0.028(2) -0.0072(17) -0.0016(16) C7 0.079(2) 0.070(2) 0.073(2) 0.0221(18) -0.0098(18) 0.0006(19) C17 0.091(3) 0.071(3) 0.103(3) 0.029(2) -0.039(2) -0.026(2) C16 0.105(3) 0.067(2) 0.074(2) 0.0094(19) -0.017(2) -0.022(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C2 S1 C10 102.30(12) . . ? C13 S11 C2 105.05(12) . . ? C12 N20 C19 109.1(2) . . ? C12 N20 H20 125.4 . . ? C19 N20 H20 125.4 . . ? C3 C2 S1 124.9(2) . . ? C3 C2 S11 118.6(2) . . ? S1 C2 S11 116.47(14) . . ? C12 C13 C14 107.4(2) . . ? C12 C13 S11 125.4(2) . . ? C14 C13 S11 126.6(2) . . ? C5 C10 C9 119.9(3) . . ? C5 C10 S1 124.8(2) . . ? C9 C10 S1 115.2(2) . . ? C6 C5 C10 118.0(3) . . ? C6 C5 C4 119.5(3) . . ? C10 C5 C4 122.5(2) . . ? C19 C14 C15 119.5(3) . . ? C19 C14 C13 105.9(2) . . ? C15 C14 C13 134.6(3) . . ? C13 C12 N20 109.4(3) . . ? C13 C12 H12 125.3 . . ? N20 C12 H12 125.3 . . ? C2 C3 C4 126.1(3) . . ? C2 C3 H3 117.0 . . ? C4 C3 H3 117.0 . . ? O C4 C3 120.9(3) . . ? O C4 C5 119.7(3) . . ? C3 C4 C5 119.4(2) . . ? C8 C9 C10 120.3(3) . . ? C8 C9 H9 119.8 . . ? C10 C9 H9 119.8 . . ? N20 C19 C14 108.3(2) . . ? N20 C19 C18 129.7(3) . . ? C14 C19 C18 121.9(3) . . ? C7 C6 C5 121.4(3) . . ? C7 C6 H6 119.3 . . ? C5 C6 H6 119.3 . . ? C16 C15 C14 118.6(3) . . ? C16 C15 H15 120.7 . . ? C14 C15 H15 120.7 . . ? C9 C8 C7 119.5(3) . . ? C9 C8 H8 120.2 . . ? C7 C8 H8 120.2 . . ? C17 C18 C19 116.7(4) . . ? C17 C18 H18 121.7 . . ? C19 C18 H18 121.7 . . ? C6 C7 C8 120.8(3) . . ? C6 C7 H7 119.6 . . ? C8 C7 H7 119.6 . . ? C18 C17 C16 122.1(3) . . ? C18 C17 H17 118.9 . . ? C16 C17 H17 118.9 . . ? C15 C16 C17 121.2(4) . . ? C15 C16 H16 119.4 . . ? C17 C16 H16 119.4 . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag S1 C2 1.718(2) . ? S1 C10 1.741(3) . ? S11 C13 1.747(3) . ? S11 C2 1.758(3) . ? O C4 1.253(3) . ? N20 C12 1.365(4) . ? N20 C19 1.366(4) . ? N20 H20 0.8600 . ? C2 C3 1.364(4) . ? C13 C12 1.357(4) . ? C13 C14 1.438(4) . ? C10 C5 1.400(3) . ? C10 C9 1.407(4) . ? C5 C6 1.394(4) . ? C5 C4 1.479(4) . ? C14 C19 1.397(4) . ? C14 C15 1.403(4) . ? C12 H12 0.9300 . ? C3 C4 1.419(4) . ? C3 H3 0.9300 . ? C9 C8 1.367(4) . ? C9 H9 0.9300 . ? C19 C18 1.401(4) . ? C6 C7 1.360(5) . ? C6 H6 0.9300 . ? C15 C16 1.368(5) . ? C15 H15 0.9300 . ? C8 C7 1.386(5) . ? C8 H8 0.9300 . ? C18 C17 1.379(6) . ? C18 H18 0.9300 . ? C7 H7 0.9300 . ? C17 C16 1.384(6) . ? C17 H17 0.9300 . ? C16 H16 0.9300 . ?