#------------------------------------------------------------------------------ #$Date: 2020-05-22 06:38:31 +0300 (Fri, 22 May 2020) $ #$Revision: 252271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/15/75/7157512.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7157512 loop_ _publ_author_name 'Wang, Dungai' 'Liang, Xiao' 'Xiong, Mingteng' 'Zhu, Heping' 'Zhou, Yifeng' 'Pan, Yuanjiang' _publ_section_title ; Synthesis of unsymmetrical disulfides via PPh3-mediated reductive coupling of thiophenols with sulfonyl chlorides ; _journal_name_full 'Organic & Biomolecular Chemistry' _journal_paper_doi 10.1039/D0OB00804D _journal_year 2020 _chemical_absolute_configuration ad _chemical_formula_moiety 'C14 H11 N S2' _chemical_formula_sum 'C14 H11 N S2' _chemical_formula_weight 257.36 _space_group_crystal_system orthorhombic _space_group_IT_number 33 _space_group_name_Hall 'P 2c -2n' _space_group_name_H-M_alt 'P n a 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary dual _audit_creation_date 2019-06-21 _audit_creation_method ; Olex2 1.2 (compiled 2018.05.29 svn.r3508 for OlexSys, GUI svn.r5506) ; _audit_update_record ; 2019-07-03 deposited with the CCDC. 2020-05-20 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 27.604(2) _cell_length_b 7.7285(6) _cell_length_c 5.8633(5) _cell_measurement_reflns_used 8130 _cell_measurement_temperature 170(2) _cell_measurement_theta_max 26.37 _cell_measurement_theta_min 2.74 _cell_volume 1250.86(17) _computing_cell_refinement 'SAINT V8.38A (?, 2016)' _computing_data_reduction 'SAINT V8.38A (?, 2016)' _computing_molecular_graphics 'Olex2 (Dolomanov et al., 2009)' _computing_publication_material 'Olex2 (Dolomanov et al., 2009)' _computing_structure_refinement 'ShelXL (Sheldrick, 2015)' _computing_structure_solution 'ShelXT (Sheldrick, 2015)' _diffrn_ambient_temperature 170.0 _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0340 _diffrn_reflns_av_unetI/netI 0.0278 _diffrn_reflns_Laue_measured_fraction_full 0.999 _diffrn_reflns_Laue_measured_fraction_max 0.998 _diffrn_reflns_limit_h_max 34 _diffrn_reflns_limit_h_min -34 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 7 _diffrn_reflns_limit_l_min -7 _diffrn_reflns_number 13139 _diffrn_reflns_point_group_measured_fraction_full 0.999 _diffrn_reflns_point_group_measured_fraction_max 0.996 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 26.415 _diffrn_reflns_theta_min 2.737 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.400 _exptl_absorpt_correction_T_max 0.7454 _exptl_absorpt_correction_T_min 0.6568 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; SADABS-2016/2 (Bruker,2016/2) was used for absorption correction. wR2(int) was 0.1095 before and 0.0555 after correction. The Ratio of minimum to maximum transmission is 0.8811. The \l/2 correction factor is Not present. ; _exptl_crystal_colour colourless _exptl_crystal_colour_primary colourless _exptl_crystal_density_diffrn 1.367 _exptl_crystal_description plate _exptl_crystal_F_000 536 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.216 _refine_diff_density_min -0.317 _refine_diff_density_rms 0.042 _refine_ls_abs_structure_details ; Flack x determined using 1009 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). ; _refine_ls_abs_structure_Flack 0.00(3) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.070 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 155 _refine_ls_number_reflns 2562 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.069 _refine_ls_R_factor_all 0.0319 _refine_ls_R_factor_gt 0.0293 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0358P)^2^+0.3965P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0754 _refine_ls_wR_factor_ref 0.0773 _reflns_Friedel_coverage 0.813 _reflns_Friedel_fraction_full 0.998 _reflns_Friedel_fraction_max 0.995 _reflns_number_gt 2405 _reflns_number_total 2562 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file d0ob00804d2.cif _cod_data_source_block 190621_wdg_0ma _cod_original_cell_volume 1250.85(17) _cod_database_code 7157512 _shelx_shelxl_version_number 2016/6 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_max 0.980 _shelx_estimated_absorpt_t_min 0.914 _olex2_refinement_description ; 1. Fixed Uiso At 1.2 times of: All C(H) groups At 1.5 times of: All C(H,H,H) groups 2.a Aromatic/amide H refined with riding coordinates: C1(H1), C2(H2), C4(H4), C5(H5), C9(H9), C10(H10), C12(H12), C13(H13) 2.b Idealised Me refined as rotating group: C7(H7A,H7B,H7C) ; _shelx_res_file ; TITL 190621_wdg_0ma_a.res in Pna2(1) 190621_wdg_0ma.res created by SHELXL-2016/6 at 14:32:47 on 21-Jun-2019 REM Old TITL 190621_wdg_0ma in Pnma REM SHELXT solution in Pna2(1) REM R1 0.064, Rweak 0.005, Alpha 0.007, Orientation a'=-a, b'=c, c'=b REM Flack x = -0.013 ( 0.033 ) from Parsons' quotients REM Formula found by SHELXT: C14 N S2 CELL 0.71073 27.6037 7.7285 5.8633 90 90 90 ZERR 4 0.0021 0.0006 0.0005 0 0 0 LATT -1 SYMM -X,-Y,0.5+Z SYMM 0.5+X,0.5-Y,+Z SYMM 0.5-X,0.5+Y,0.5+Z SFAC C H N S UNIT 56 44 4 8 L.S. 4 0 0 PLAN 20 SIZE 0.05 0.18 0.23 TEMP -103.15 htab BOND $H list 4 fmap 2 53 acta REM REM REM WGHT 0.035800 0.396500 FVAR 0.68016 S1 4 0.225260 0.675283 0.155499 11.00000 0.02929 0.02862 = 0.02754 0.00520 -0.00111 -0.00134 S2 4 0.273181 0.474917 0.138861 11.00000 0.02938 0.03078 = 0.02718 -0.00790 0.00172 -0.00125 N1 3 0.475143 0.640535 0.864524 11.00000 0.03448 0.06404 = 0.06511 -0.00842 -0.00951 0.00501 C1 1 0.182360 0.522074 0.540100 11.00000 0.02589 0.02606 = 0.02936 0.00020 -0.00411 0.00279 AFIX 43 H1 2 0.213843 0.493749 0.593861 11.00000 -1.20000 AFIX 0 C2 1 0.141915 0.481407 0.669893 11.00000 0.03628 0.02741 = 0.02369 0.00217 0.00049 0.00171 AFIX 43 H2 2 0.146193 0.423211 0.811180 11.00000 -1.20000 AFIX 0 C3 1 0.095175 0.523474 0.598976 11.00000 0.03028 0.02670 = 0.03344 -0.00605 0.00267 -0.00128 C4 1 0.090368 0.606838 0.389560 11.00000 0.02632 0.03557 = 0.03348 -0.00345 -0.00493 0.00250 AFIX 43 H4 2 0.058987 0.638276 0.337523 11.00000 -1.20000 AFIX 0 C5 1 0.130254 0.644960 0.255457 11.00000 0.03129 0.02939 = 0.02719 0.00137 -0.00643 0.00200 AFIX 43 H5 2 0.125940 0.698971 0.111335 11.00000 -1.20000 AFIX 0 C6 1 0.176648 0.604325 0.331346 11.00000 0.02688 0.02288 = 0.02445 -0.00299 -0.00052 -0.00070 C7 1 0.051695 0.481103 0.743533 11.00000 0.03321 0.04762 = 0.04264 -0.00276 0.00700 -0.00216 AFIX 137 H7A 2 0.033979 0.384265 0.675068 11.00000 -1.50000 H7B 2 0.030440 0.582447 0.752396 11.00000 -1.50000 H7C 2 0.062360 0.449014 0.897241 11.00000 -1.50000 AFIX 0 C8 1 0.321602 0.530989 0.324876 11.00000 0.02575 0.02134 = 0.02700 0.00121 0.00278 -0.00062 C9 1 0.367435 0.473849 0.256026 11.00000 0.03289 0.02710 = 0.02823 -0.00218 0.00644 0.00093 AFIX 43 H9 2 0.371176 0.414794 0.115021 11.00000 -1.20000 AFIX 0 C10 1 0.407152 0.503420 0.393217 11.00000 0.02517 0.03153 = 0.03746 0.00148 0.00570 0.00425 AFIX 43 H10 2 0.438286 0.464390 0.347162 11.00000 -1.20000 AFIX 0 C11 1 0.401533 0.590856 0.600013 11.00000 0.02831 0.02575 = 0.03385 0.00520 0.00004 -0.00142 C12 1 0.355926 0.649354 0.667525 11.00000 0.03086 0.02615 = 0.02679 -0.00231 0.00020 -0.00104 AFIX 43 H12 2 0.352231 0.709919 0.807440 11.00000 -1.20000 AFIX 0 C13 1 0.315956 0.618774 0.529581 11.00000 0.02505 0.02652 = 0.02686 -0.00205 0.00412 0.00130 AFIX 43 H13 2 0.284804 0.657873 0.575251 11.00000 -1.20000 AFIX 0 C14 1 0.442830 0.619672 0.746352 11.00000 0.02917 0.03625 = 0.04699 0.00042 0.00109 0.00318 HKLF 4 REM 190621_wdg_0ma_a.res in Pna2(1) REM R1 = 0.0293 for 2405 Fo > 4sig(Fo) and 0.0319 for all 2562 data REM 155 parameters refined using 1 restraints END WGHT 0.0358 0.3966 REM Instructions for potential hydrogen bonds EQIV $1 -x+1/2, y-1/2, z+1/2 HTAB C1 S1_$1 EQIV $2 -x+1/2, y+1/2, z+1/2 HTAB C13 S2_$2 REM Highest difference peak 0.216, deepest hole -0.317, 1-sigma level 0.042 Q1 1 0.2379 0.4874 0.1299 11.00000 0.05 0.22 Q2 1 0.2326 0.3960 0.2381 11.00000 0.05 0.21 Q3 1 0.2672 0.7491 0.1475 11.00000 0.05 0.21 Q4 1 0.2322 0.3783 0.0454 11.00000 0.05 0.21 Q5 1 0.2625 0.6890 0.1561 11.00000 0.05 0.21 Q6 1 0.1962 0.6572 0.1605 11.00000 0.05 0.20 Q7 1 0.3019 0.4751 0.1434 11.00000 0.05 0.18 Q8 1 0.2834 0.4694 0.2931 11.00000 0.05 0.18 Q9 1 0.3810 0.5984 0.6426 11.00000 0.05 0.16 Q10 1 0.2312 0.6947 0.5585 11.00000 0.05 0.16 Q11 1 0.2169 0.6765 -0.0002 11.00000 0.05 0.16 Q12 1 0.1614 0.6387 0.3108 11.00000 0.05 0.16 Q13 1 0.2345 0.6774 0.7531 11.00000 0.05 0.16 Q14 1 0.1790 0.5348 0.3998 11.00000 0.05 0.15 Q15 1 0.0197 0.4732 0.6953 11.00000 0.05 0.15 Q16 1 0.2025 0.6408 0.2878 11.00000 0.05 0.15 Q17 1 0.2053 0.7191 0.5615 11.00000 0.05 0.15 Q18 1 0.3399 0.4803 0.2860 11.00000 0.05 0.15 Q19 1 0.1193 0.4826 0.6289 11.00000 0.05 0.14 Q20 1 0.3206 0.5264 0.4483 11.00000 0.05 0.14 ; _shelx_res_checksum 98492 _olex2_submission_special_instructions 'No special instructions were received' loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, -y, z+1/2' 'x+1/2, -y+1/2, z' '-x+1/2, y+1/2, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group S1 S 0.22526(2) 0.67528(8) 0.15550(12) 0.02848(17) Uani 1 1 d . . . . . S2 S 0.27318(2) 0.47492(8) 0.13886(13) 0.02911(18) Uani 1 1 d . . . . . N1 N 0.47514(10) 0.6405(4) 0.8645(6) 0.0545(8) Uani 1 1 d . . . . . C1 C 0.18236(10) 0.5221(4) 0.5401(5) 0.0271(6) Uani 1 1 d . . . . . H1 H 0.213843 0.493749 0.593861 0.033 Uiso 1 1 calc R . . . . C2 C 0.14191(10) 0.4814(3) 0.6699(5) 0.0291(6) Uani 1 1 d . . . . . H2 H 0.146193 0.423211 0.811180 0.035 Uiso 1 1 calc R . . . . C3 C 0.09517(10) 0.5235(3) 0.5990(5) 0.0301(6) Uani 1 1 d . . . . . C4 C 0.09037(10) 0.6068(4) 0.3896(6) 0.0318(6) Uani 1 1 d . . . . . H4 H 0.058987 0.638276 0.337523 0.038 Uiso 1 1 calc R . . . . C5 C 0.13025(10) 0.6450(4) 0.2555(5) 0.0293(6) Uani 1 1 d . . . . . H5 H 0.125940 0.698971 0.111335 0.035 Uiso 1 1 calc R . . . . C6 C 0.17665(9) 0.6043(3) 0.3313(5) 0.0247(6) Uani 1 1 d . . . . . C7 C 0.05169(11) 0.4811(4) 0.7435(6) 0.0412(7) Uani 1 1 d . . . . . H7A H 0.033979 0.384265 0.675068 0.062 Uiso 1 1 calc GR . . . . H7B H 0.030440 0.582447 0.752396 0.062 Uiso 1 1 calc GR . . . . H7C H 0.062360 0.449014 0.897241 0.062 Uiso 1 1 calc GR . . . . C8 C 0.32160(9) 0.5310(3) 0.3249(5) 0.0247(6) Uani 1 1 d . . . . . C9 C 0.36743(10) 0.4738(3) 0.2560(5) 0.0294(6) Uani 1 1 d . . . . . H9 H 0.371176 0.414794 0.115021 0.035 Uiso 1 1 calc R . . . . C10 C 0.40715(10) 0.5034(4) 0.3932(6) 0.0314(6) Uani 1 1 d . . . . . H10 H 0.438286 0.464390 0.347162 0.038 Uiso 1 1 calc R . . . . C11 C 0.40153(9) 0.5909(3) 0.6000(5) 0.0293(6) Uani 1 1 d . . . . . C12 C 0.35593(9) 0.6494(3) 0.6675(6) 0.0279(6) Uani 1 1 d . . . . . H12 H 0.352231 0.709919 0.807440 0.034 Uiso 1 1 calc R . . . . C13 C 0.31596(9) 0.6188(4) 0.5296(5) 0.0261(6) Uani 1 1 d . . . . . H13 H 0.284804 0.657873 0.575251 0.031 Uiso 1 1 calc R . . . . C14 C 0.44283(10) 0.6197(4) 0.7464(6) 0.0375(7) Uani 1 1 d . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0293(3) 0.0286(3) 0.0275(3) 0.0052(4) -0.0011(3) -0.0013(2) S2 0.0294(3) 0.0308(3) 0.0272(3) -0.0079(4) 0.0017(3) -0.0012(2) N1 0.0345(14) 0.0640(19) 0.065(2) -0.0084(19) -0.0095(16) 0.0050(14) C1 0.0259(13) 0.0261(13) 0.0294(14) 0.0002(11) -0.0041(11) 0.0028(10) C2 0.0363(13) 0.0274(12) 0.0237(15) 0.0022(13) 0.0005(12) 0.0017(10) C3 0.0303(13) 0.0267(12) 0.0334(16) -0.0060(12) 0.0027(12) -0.0013(10) C4 0.0263(13) 0.0356(15) 0.0335(15) -0.0035(13) -0.0049(13) 0.0025(12) C5 0.0313(14) 0.0294(14) 0.0272(14) 0.0014(12) -0.0064(11) 0.0020(11) C6 0.0269(12) 0.0229(12) 0.0244(14) -0.0030(11) -0.0005(10) -0.0007(10) C7 0.0332(16) 0.0476(18) 0.0426(18) -0.0028(15) 0.0070(14) -0.0022(13) C8 0.0257(12) 0.0213(12) 0.0270(15) 0.0012(10) 0.0028(11) -0.0006(10) C9 0.0329(14) 0.0271(13) 0.0282(15) -0.0022(12) 0.0064(12) 0.0009(11) C10 0.0252(12) 0.0315(14) 0.0375(16) 0.0015(13) 0.0057(12) 0.0042(11) C11 0.0283(12) 0.0257(12) 0.0338(16) 0.0052(12) 0.0000(12) -0.0014(9) C12 0.0309(12) 0.0261(12) 0.0268(14) -0.0023(13) 0.0002(13) -0.0010(9) C13 0.0251(12) 0.0265(13) 0.0269(13) -0.0020(11) 0.0041(11) 0.0013(10) C14 0.0292(14) 0.0363(15) 0.0470(18) 0.0004(14) 0.0011(13) 0.0032(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C6 S1 S2 106.44(9) . . ? C8 S2 S1 105.85(9) . . ? C2 C1 H1 120.1 . . ? C2 C1 C6 119.7(2) . . ? C6 C1 H1 120.1 . . ? C1 C2 H2 119.1 . . ? C1 C2 C3 121.9(3) . . ? C3 C2 H2 119.1 . . ? C2 C3 C7 121.3(3) . . ? C4 C3 C2 117.3(3) . . ? C4 C3 C7 121.4(3) . . ? C3 C4 H4 119.2 . . ? C5 C4 C3 121.5(3) . . ? C5 C4 H4 119.2 . . ? C4 C5 H5 119.9 . . ? C4 C5 C6 120.1(3) . . ? C6 C5 H5 119.9 . . ? C1 C6 S1 124.5(2) . . ? C1 C6 C5 119.3(3) . . ? C5 C6 S1 116.1(2) . . ? C3 C7 H7A 109.5 . . ? C3 C7 H7B 109.5 . . ? C3 C7 H7C 109.5 . . ? H7A C7 H7B 109.5 . . ? H7A C7 H7C 109.5 . . ? H7B C7 H7C 109.5 . . ? C9 C8 S2 115.2(2) . . ? C13 C8 S2 124.4(2) . . ? C13 C8 C9 120.4(3) . . ? C8 C9 H9 120.1 . . ? C10 C9 C8 119.9(3) . . ? C10 C9 H9 120.1 . . ? C9 C10 H10 120.1 . . ? C9 C10 C11 119.9(3) . . ? C11 C10 H10 120.1 . . ? C10 C11 C14 120.2(3) . . ? C12 C11 C10 120.2(3) . . ? C12 C11 C14 119.6(3) . . ? C11 C12 H12 120.1 . . ? C13 C12 C11 119.8(3) . . ? C13 C12 H12 120.1 . . ? C8 C13 C12 119.9(2) . . ? C8 C13 H13 120.1 . . ? C12 C13 H13 120.1 . . ? N1 C14 C11 178.9(4) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag S1 S2 2.0389(9) . ? S1 C6 1.779(3) . ? S2 C8 1.779(3) . ? N1 C14 1.141(4) . ? C1 H1 0.9500 . ? C1 C2 1.387(4) . ? C1 C6 1.388(4) . ? C2 H2 0.9500 . ? C2 C3 1.394(4) . ? C3 C4 1.393(4) . ? C3 C7 1.505(4) . ? C4 H4 0.9500 . ? C4 C5 1.385(4) . ? C5 H5 0.9500 . ? C5 C6 1.392(4) . ? C7 H7A 0.9800 . ? C7 H7B 0.9800 . ? C7 H7C 0.9800 . ? C8 C9 1.400(4) . ? C8 C13 1.388(4) . ? C9 H9 0.9500 . ? C9 C10 1.379(4) . ? C10 H10 0.9500 . ? C10 C11 1.397(4) . ? C11 C12 1.395(4) . ? C11 C14 1.444(4) . ? C12 H12 0.9500 . ? C12 C13 1.388(4) . ? C13 H13 0.9500 . ?