#------------------------------------------------------------------------------ #$Date: 2020-05-22 04:35:48 +0300 (Fri, 22 May 2020) $ #$Revision: 252267 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/24/05/7240564.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7240564 loop_ _publ_author_name 'Marek, Paulina Halina' 'Cichowicz, Grzegorz' 'Osowicka, Dorota' 'Madura, Izabela Dorota' 'Dobrzycki, Lukasz' 'Cyranski, Michal' 'Ciesielski, Arkadiusz' _publ_section_title ; Polymorphism and structural diversities of LiClO4 - \b-alanine ionic co-crystals ; _journal_name_full CrystEngComm _journal_paper_doi 10.1039/D0CE00592D _journal_year 2020 _chemical_formula_moiety 'C6 H14 Li N2 O4, Cl O4' _chemical_formula_sum 'C6 H14 Cl Li N2 O8' _chemical_formula_weight 284.58 _chemical_name_systematic 'catena-(bis(/m2-beta-Alanine)-lithium perchlotate)' _space_group_crystal_system orthorhombic _space_group_IT_number 61 _space_group_name_Hall '-P 2ac 2ab' _space_group_name_H-M_alt 'P b c a' _atom_sites_solution_hydrogens mixed _atom_sites_solution_primary dual _audit_creation_date 2019-06-17 _audit_creation_method ; Olex2 1.2 (compiled 2018.05.29 svn.r3508 for OlexSys, GUI svn.r5506) ; _audit_update_record ; 2020-04-04 deposited with the CCDC. 2020-05-21 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 8 _cell_length_a 8.3651(6) _cell_length_b 9.9433(7) _cell_length_c 27.584(2) _cell_measurement_reflns_used 9987 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 30.56 _cell_measurement_theta_min 2.85 _cell_volume 2294.3(3) _computing_cell_refinement 'SAINT v8.37A (Bruker, 2015)' _computing_data_reduction 'SAINT v8.37A (Bruker, 2015)' _computing_molecular_graphics 'Olex2 (Dolomanov et al., 2009)' _computing_publication_material 'Olex2 (Dolomanov et al., 2009)' _computing_structure_refinement 'ShelXL (Sheldrick, 2015)' _computing_structure_solution 'XT (Sheldrick, 2015)' _diffrn_ambient_temperature 100.04 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0265 _diffrn_reflns_av_unetI/netI 0.0187 _diffrn_reflns_Laue_measured_fraction_full 0.998 _diffrn_reflns_Laue_measured_fraction_max 0.997 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 39 _diffrn_reflns_limit_l_min -39 _diffrn_reflns_number 20002 _diffrn_reflns_point_group_measured_fraction_full 0.998 _diffrn_reflns_point_group_measured_fraction_max 0.997 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 30.498 _diffrn_reflns_theta_min 2.848 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.369 _exptl_absorpt_correction_T_max 0.7461 _exptl_absorpt_correction_T_min 0.6900 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS-2016/2 (Bruker,2016/2) was used for absorption correction. wR2(int) was 0.0612 before and 0.0532 after correction. The Ratio of minimum to maximum transmission is 0.9248. The \l/2 correction factor is Not present.' _exptl_crystal_colour colourless _exptl_crystal_colour_primary colourless _exptl_crystal_density_diffrn 1.648 _exptl_crystal_description block _exptl_crystal_F_000 1184 _exptl_crystal_recrystallization_method 'Re-crystallisation from solvent: water' _exptl_crystal_size_max 0.22 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.514 _refine_diff_density_min -0.565 _refine_diff_density_rms 0.070 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.178 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 187 _refine_ls_number_reflns 3483 _refine_ls_number_restraints 6 _refine_ls_restrained_S_all 1.177 _refine_ls_R_factor_all 0.0403 _refine_ls_R_factor_gt 0.0358 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0272P)^2^+2.2619P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0835 _refine_ls_wR_factor_ref 0.0860 _reflns_Friedel_coverage 0.000 _reflns_number_gt 3160 _reflns_number_total 3483 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file d0ce00592d2.cif _cod_data_source_block 3 _cod_original_cell_volume 2294.4(3) _cod_database_code 7240564 _shelx_shelxl_version_number 2014/7 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_max 0.947 _shelx_estimated_absorpt_t_min 0.923 _olex2_refinement_description ; 1. Fixed Uiso At 1.2 times of: All C(H,H) groups 2. Restrained distances N11-H11C = N11-H11A = N11-H11B = N1-H1B = N1-H1C = N1-H1A 0.9 with sigma of 0.001 3.a Secondary CH2 refined with riding coordinates: C2(H2A,H2B), C3(H3A,H3B), C12(H12A,H12B), C13(H13A,H13B) ; _shelx_res_file ; mo_phm_krowa2_100k_0m_a.res created by SHELXL-2014/7 TITL mo_phm_krowa2_100K_0m_a.res in Pbca REM Old TITL mo_phm_krowa2_100K_0m in Pbca REM SHELXT solution in Pbca REM R1 0.101, Rweak 0.002, Alpha 0.024, Orientation as input REM Formula found by SHELXT: C6 Cl Li N3 O7 CELL 0.71073 8.3651 9.9433 27.5843 90 90 90 ZERR 8 0.0006 0.0007 0.0021 0 0 0 LATT 1 SYMM 0.5-X,-Y,0.5+Z SYMM -X,0.5+Y,0.5-Z SYMM 0.5+X,0.5-Y,-Z SFAC C H Cl Li N O UNIT 48 112 8 8 16 64 DFIX 0.9 0.001 N11 H11c N11 H11a N11 H11b N1 H1b N1 H1c N1 H1a L.S. 10 PLAN 2 SIZE 0.18 0.15 0.22 TEMP -173.11 BOND $H fmap 2 acta OMIT -3 61 OMIT 0 4 7 REM REM REM WGHT 0.027200 2.261900 FVAR 0.51345 C1 1 0.433951 0.811848 0.478119 11.00000 0.00599 0.01037 = 0.00860 0.00041 -0.00048 -0.00137 C2 1 0.395705 0.915763 0.439179 11.00000 0.00806 0.01088 = 0.00911 0.00176 0.00143 0.00009 AFIX 23 H2A 2 0.485960 0.979915 0.437126 11.00000 -1.20000 H2B 2 0.388050 0.869129 0.407554 11.00000 -1.20000 AFIX 0 C3 1 0.242630 0.994979 0.447227 11.00000 0.00966 0.00908 = 0.01312 0.00167 0.00132 0.00051 AFIX 23 H3A 2 0.247446 1.040221 0.479164 11.00000 -1.20000 H3B 2 0.233062 1.065263 0.421972 11.00000 -1.20000 AFIX 0 C11 1 0.242564 0.565442 0.626464 11.00000 0.00636 0.00752 = 0.00772 0.00138 -0.00275 -0.00047 C12 1 0.151317 0.498561 0.667833 11.00000 0.00936 0.00840 = 0.01267 0.00225 0.00305 0.00009 AFIX 23 H12A 2 0.069150 0.561506 0.680177 11.00000 -1.20000 H12B 2 0.095840 0.417684 0.655378 11.00000 -1.20000 AFIX 0 C13 1 0.261265 0.458076 0.709224 11.00000 0.01497 0.01016 = 0.00867 -0.00032 0.00203 -0.00080 AFIX 23 H13A 2 0.314251 0.539209 0.722436 11.00000 -1.20000 H13B 2 0.197154 0.417022 0.735512 11.00000 -1.20000 AFIX 0 CL1 3 0.838106 0.191795 0.681055 11.00000 0.00813 0.00924 = 0.00768 -0.00070 0.00022 0.00137 LI1 4 0.222095 0.812519 0.569388 11.00000 0.01118 0.01115 = 0.00964 0.00016 0.00094 0.00005 N1 5 0.098828 0.905685 0.445472 11.00000 0.00770 0.01274 = 0.00857 0.00152 0.00014 0.00140 H1A 2 0.106532 0.843463 0.421892 11.00000 0.01831 H1B 2 0.080323 0.862909 0.473673 11.00000 0.02504 H1C 2 0.007060 0.948179 0.438019 11.00000 0.02396 N11 5 0.385762 0.359992 0.692660 11.00000 0.01252 0.00939 = 0.00992 0.00132 -0.00271 0.00033 H11A 2 0.467124 0.403742 0.678275 11.00000 0.01744 H11B 2 0.426788 0.315787 0.718265 11.00000 0.02277 H11C 2 0.347602 0.298758 0.671604 11.00000 0.02902 O1 6 0.850739 0.275286 0.638406 11.00000 0.02197 0.01243 = 0.00979 0.00319 -0.00151 -0.00110 O2 6 0.962173 0.228259 0.715152 11.00000 0.01377 0.02562 = 0.01076 -0.00498 -0.00490 0.00053 O3 6 0.857371 0.052433 0.667209 11.00000 0.02184 0.00875 = 0.01658 -0.00219 -0.00102 0.00444 O4 6 0.684233 0.210431 0.703283 11.00000 0.01022 0.02158 = 0.02399 -0.00286 0.00749 0.00194 O5 6 0.372321 0.824023 0.519001 11.00000 0.01339 0.01829 = 0.00921 0.00216 0.00412 0.00292 O6 6 0.531265 0.719303 0.466840 11.00000 0.01224 0.01464 = 0.01157 0.00213 0.00291 0.00555 O15 6 0.313039 0.489648 0.596877 11.00000 0.01049 0.00760 = 0.01159 -0.00184 0.00179 -0.00077 O16 6 0.244600 0.692273 0.624470 11.00000 0.01468 0.00627 = 0.00925 0.00048 -0.00037 -0.00021 HKLF 4 REM mo_phm_krowa2_100K_0m_a.res in Pbca REM R1 = 0.0358 for 3160 Fo > 4sig(Fo) and 0.0403 for all 3483 data REM 187 parameters refined using 6 restraints END WGHT 0.0272 2.2617 REM Highest difference peak 0.514, deepest hole -0.565, 1-sigma level 0.070 Q1 1 0.4098 0.8612 0.4579 11.00000 0.05 0.51 Q2 1 0.1949 0.5288 0.6490 11.00000 0.05 0.44 ; _shelx_res_checksum 97757 _olex2_submission_special_instructions 'No special instructions were received' loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'x, -y-1/2, z-1/2' '-x-1/2, y-1/2, z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group C1 C 0.43395(15) 0.81185(13) 0.47812(5) 0.0083(2) Uani 1 1 d . . . . . C2 C 0.39571(15) 0.91576(13) 0.43918(5) 0.0093(2) Uani 1 1 d . . . . . H2A H 0.4860 0.9799 0.4371 0.011 Uiso 1 1 calc R . . . . H2B H 0.3881 0.8691 0.4076 0.011 Uiso 1 1 calc R . . . . C3 C 0.24263(16) 0.99498(14) 0.44723(5) 0.0106(2) Uani 1 1 d . . . . . H3A H 0.2474 1.0402 0.4792 0.013 Uiso 1 1 calc R . . . . H3B H 0.2331 1.0653 0.4220 0.013 Uiso 1 1 calc R . . . . C11 C 0.24256(15) 0.56544(13) 0.62646(4) 0.0072(2) Uani 1 1 d . . . . . C12 C 0.15132(16) 0.49856(13) 0.66783(5) 0.0101(2) Uani 1 1 d . . . . . H12A H 0.0692 0.5615 0.6802 0.012 Uiso 1 1 calc R . . . . H12B H 0.0958 0.4177 0.6554 0.012 Uiso 1 1 calc R . . . . C13 C 0.26127(17) 0.45808(14) 0.70922(5) 0.0113(2) Uani 1 1 d . . . . . H13A H 0.3143 0.5392 0.7224 0.014 Uiso 1 1 calc R . . . . H13B H 0.1972 0.4170 0.7355 0.014 Uiso 1 1 calc R . . . . Cl1 Cl 0.83811(4) 0.19179(3) 0.68105(2) 0.00835(8) Uani 1 1 d . . . . . Li1 Li 0.2221(3) 0.8125(2) 0.56939(8) 0.0107(4) Uani 1 1 d . . . . . N1 N 0.09883(14) 0.90568(12) 0.44547(4) 0.0097(2) Uani 1 1 d D . . . . H1A H 0.107(2) 0.8435(14) 0.4219(5) 0.018(5) Uiso 1 1 d D . . . . H1B H 0.080(3) 0.8629(18) 0.4737(4) 0.025(5) Uiso 1 1 d D . . . . H1C H 0.0071(13) 0.9482(18) 0.4380(7) 0.024(5) Uiso 1 1 d D . . . . N11 N 0.38576(15) 0.35999(12) 0.69266(4) 0.0106(2) Uani 1 1 d D . . . . H11A H 0.4671(15) 0.4037(17) 0.6783(6) 0.017(5) Uiso 1 1 d D . . . . H11B H 0.427(2) 0.3158(18) 0.7183(5) 0.023(5) Uiso 1 1 d D . . . . H11C H 0.348(2) 0.2988(16) 0.6716(6) 0.029(6) Uiso 1 1 d D . . . . O1 O 0.85074(13) 0.27529(10) 0.63841(4) 0.0147(2) Uani 1 1 d . . . . . O2 O 0.96217(13) 0.22826(12) 0.71515(4) 0.0167(2) Uani 1 1 d . . . . . O3 O 0.85737(13) 0.05243(10) 0.66721(4) 0.0157(2) Uani 1 1 d . . . . . O4 O 0.68423(13) 0.21043(12) 0.70328(4) 0.0186(2) Uani 1 1 d . . . . . O5 O 0.37232(12) 0.82402(11) 0.51900(4) 0.0136(2) Uani 1 1 d . . . . . O6 O 0.53127(12) 0.71930(10) 0.46684(4) 0.0128(2) Uani 1 1 d . . . . . O15 O 0.31304(11) 0.48965(10) 0.59688(3) 0.00989(18) Uani 1 1 d . . . . . O16 O 0.24460(12) 0.69227(9) 0.62447(3) 0.01007(18) Uani 1 1 d . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0060(5) 0.0104(6) 0.0086(5) 0.0004(4) -0.0005(4) -0.0014(4) C2 0.0081(5) 0.0109(6) 0.0091(5) 0.0018(4) 0.0014(4) 0.0001(4) C3 0.0097(5) 0.0091(6) 0.0131(5) 0.0017(5) 0.0013(5) 0.0005(4) C11 0.0064(5) 0.0075(5) 0.0077(5) 0.0014(4) -0.0027(4) -0.0005(4) C12 0.0094(5) 0.0084(5) 0.0127(6) 0.0022(4) 0.0031(5) 0.0001(4) C13 0.0150(6) 0.0102(6) 0.0087(5) -0.0003(4) 0.0020(5) -0.0008(5) Cl1 0.00813(13) 0.00924(13) 0.00768(13) -0.00070(10) 0.00022(10) 0.00137(10) Li1 0.0112(10) 0.0112(11) 0.0096(10) 0.0002(8) 0.0009(8) 0.0001(8) N1 0.0077(5) 0.0127(5) 0.0086(5) 0.0015(4) 0.0001(4) 0.0014(4) N11 0.0125(5) 0.0094(5) 0.0099(5) 0.0013(4) -0.0027(4) 0.0003(4) O1 0.0220(5) 0.0124(5) 0.0098(4) 0.0032(4) -0.0015(4) -0.0011(4) O2 0.0138(5) 0.0256(6) 0.0108(4) -0.0050(4) -0.0049(4) 0.0005(4) O3 0.0218(5) 0.0088(4) 0.0166(5) -0.0022(4) -0.0010(4) 0.0044(4) O4 0.0102(5) 0.0216(5) 0.0240(5) -0.0029(4) 0.0075(4) 0.0019(4) O5 0.0134(4) 0.0183(5) 0.0092(4) 0.0022(4) 0.0041(4) 0.0029(4) O6 0.0122(4) 0.0146(5) 0.0116(4) 0.0021(4) 0.0029(4) 0.0055(4) O15 0.0105(4) 0.0076(4) 0.0116(4) -0.0018(3) 0.0018(3) -0.0008(3) O16 0.0147(4) 0.0063(4) 0.0092(4) 0.0005(3) -0.0004(4) -0.0002(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Li Li -0.0003 0.0001 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O5 C1 C2 119.02(12) . . ? O5 C1 O6 123.95(12) . . ? O6 C1 C2 117.00(11) . . ? C1 C2 H2A 108.5 . . ? C1 C2 H2B 108.5 . . ? H2A C2 H2B 107.5 . . ? C3 C2 C1 115.17(11) . . ? C3 C2 H2A 108.5 . . ? C3 C2 H2B 108.5 . . ? C2 C3 H3A 109.3 . . ? C2 C3 H3B 109.3 . . ? H3A C3 H3B 108.0 . . ? N1 C3 C2 111.42(11) . . ? N1 C3 H3A 109.3 . . ? N1 C3 H3B 109.3 . . ? O15 C11 C12 117.31(11) . . ? O15 C11 O16 124.34(12) . . ? O16 C11 C12 118.35(11) . . ? C11 C12 H12A 109.2 . . ? C11 C12 H12B 109.2 . . ? H12A C12 H12B 107.9 . . ? C13 C12 C11 111.99(11) . . ? C13 C12 H12A 109.2 . . ? C13 C12 H12B 109.2 . . ? C12 C13 H13A 109.4 . . ? C12 C13 H13B 109.4 . . ? H13A C13 H13B 108.0 . . ? N11 C13 C12 111.34(11) . . ? N11 C13 H13A 109.4 . . ? N11 C13 H13B 109.4 . . ? O1 Cl1 O2 109.46(7) . . ? O1 Cl1 O3 109.12(6) . . ? O3 Cl1 O2 109.38(7) . . ? O4 Cl1 O1 109.81(7) . . ? O4 Cl1 O2 109.43(7) . . ? O4 Cl1 O3 109.62(7) . . ? O5 Li1 O6 100.50(12) . 4_466 ? O5 Li1 O15 109.60(12) . 8_665 ? O5 Li1 O16 123.49(13) . . ? O6 Li1 O15 103.20(12) 4_466 8_665 ? O6 Li1 O16 112.85(13) 4_466 . ? O15 Li1 O16 105.53(12) 8_665 . ? C3 N1 H1A 112.0(13) . . ? C3 N1 H1B 113.0(14) . . ? C3 N1 H1C 114.5(13) . . ? H1A N1 H1B 108.2(18) . . ? H1A N1 H1C 102.6(18) . . ? H1B N1 H1C 105.8(19) . . ? C13 N11 H11A 110.2(13) . . ? C13 N11 H11B 110.1(13) . . ? C13 N11 H11C 113.0(14) . . ? H11A N11 H11B 107.1(18) . . ? H11A N11 H11C 108.1(18) . . ? H11B N11 H11C 108.1(18) . . ? C1 O5 Li1 160.26(13) . . ? C1 O6 Li1 141.78(12) . 4_566 ? C11 O15 Li1 136.61(11) . 8_655 ? C11 O16 Li1 130.36(11) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C1 C2 1.5244(18) . ? C1 O5 1.2459(16) . ? C1 O6 1.2674(16) . ? C2 H2A 0.9900 . ? C2 H2B 0.9900 . ? C2 C3 1.5197(18) . ? C3 H3A 0.9900 . ? C3 H3B 0.9900 . ? C3 N1 1.4959(18) . ? C11 C12 1.5255(17) . ? C11 O15 1.2576(16) . ? C11 O16 1.2624(16) . ? C12 H12A 0.9900 . ? C12 H12B 0.9900 . ? C12 C13 1.5204(19) . ? C13 H13A 0.9900 . ? C13 H13B 0.9900 . ? C13 N11 1.4982(18) . ? Cl1 O1 1.4437(10) . ? Cl1 O2 1.4468(10) . ? Cl1 O3 1.4464(10) . ? Cl1 O4 1.4377(11) . ? Li1 O5 1.877(3) . ? Li1 O6 1.910(3) 4_466 ? Li1 O15 1.940(3) 8_665 ? Li1 O16 1.943(3) . ? N1 H1A 0.9000(10) . ? N1 H1B 0.9000(10) . ? N1 H1C 0.9000(10) . ? N11 H11A 0.8999(10) . ? N11 H11B 0.8999(10) . ? N11 H11C 0.9000(10) . ? O6 Li1 1.910(3) 4_566 ? O15 Li1 1.940(3) 8_655 ?