#------------------------------------------------------------------------------ #$Date: 2024-02-04 13:39:34 +0200 (Sun, 04 Feb 2024) $ #$Revision: 289451 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/24/78/7247834.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7247834 loop_ _publ_author_name 'Duan, Wen-Long' 'Yan, Ming-Yue' 'Yan, Feng' 'Luan, Jian' _publ_section_title ; Fabrication of two 5-R-isophthalic acid-modulated Cu-based coordination polymers as urease inhibitors ; _journal_issue 3 _journal_name_full CrystEngComm _journal_page_first 324 _journal_page_last 333 _journal_paper_doi 10.1039/D3CE01109G _journal_volume 26 _journal_year 2024 _chemical_formula_sum 'C34 H24 Cu2 N6 O17' _chemical_formula_weight 915.67 _space_group_IT_number 62 _space_group_name_Hall '-P 2ac 2n' _space_group_name_H-M_alt 'P n m a' _symmetry_cell_setting orthorhombic _symmetry_space_group_name_H-M 'P n m a' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2023-08-10 deposited with the CCDC. 2023-12-04 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 13.3687(6) _cell_length_b 19.6383(9) _cell_length_c 12.8093(5) _cell_measurement_reflns_used 54831 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 28.34 _cell_measurement_theta_min 2.43 _cell_volume 3362.9(3) _computing_cell_refinement 'SMART (Bruker, 2001)' _computing_data_collection 'SMART (Bruker, 2001)' _computing_data_reduction 'SAINT+ (Bruker, 1999)' _computing_molecular_graphics 'PLATON (Spek, 2003)' _computing_publication_material 'SHELXTL (1998)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0814 _diffrn_reflns_av_sigmaI/netI 0.0395 _diffrn_reflns_limit_h_max 17 _diffrn_reflns_limit_h_min -17 _diffrn_reflns_limit_k_max 24 _diffrn_reflns_limit_k_min -26 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 52068 _diffrn_reflns_theta_full 28.34 _diffrn_reflns_theta_max 28.34 _diffrn_reflns_theta_min 2.43 _exptl_absorpt_coefficient_mu 1.360 _exptl_absorpt_correction_T_max 0.838 _exptl_absorpt_correction_T_min 0.804 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details SADABS _exptl_crystal_colour BLUE _exptl_crystal_density_diffrn 1.809 _exptl_crystal_density_method 'not measured' _exptl_crystal_description BLOCK _exptl_crystal_F_000 1856 _exptl_crystal_size_max 0.16 _exptl_crystal_size_mid 0.14 _exptl_crystal_size_min 0.13 _refine_diff_density_max 0.340 _refine_diff_density_min -0.499 _refine_diff_density_rms 0.074 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.000 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 280 _refine_ls_number_reflns 4302 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.000 _refine_ls_R_factor_all 0.0799 _refine_ls_R_factor_gt 0.0402 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0501P)^2^+2.7570P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0922 _refine_ls_wR_factor_ref 0.1094 _reflns_number_gt 2850 _reflns_number_total 4302 _reflns_threshold_expression >2sigma(I) _cod_data_source_file d3ce01109g2.cif _cod_data_source_block Cu_CP-NO2 _cod_depositor_comments ; The following automatic conversions were performed: data item '_symmetry_cell_setting' value 'Orthorhombic' was changed to 'orthorhombic' in accordance with the /home/data/users/saulius/crontab/automatic-downloads/rss-feeds/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 last updated on 2011-04-26. Automatic conversion script Id: cif_fix_values 8170 2020-07-09 18:12:32Z antanas Adding full bibliography for 7247833--7247834.cif. ; _cod_database_code 7247834 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z+1/2' '-x, y+1/2, -z' '-x, -y, -z' 'x-1/2, y, -z-1/2' '-x-1/2, y-1/2, z-1/2' 'x, -y-1/2, z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Cu1 Cu 0.63575(3) 0.024511(17) 0.61855(3) 0.02865(12) Uani 1 1 d . . . O1 O 0.64608(15) 0.11936(10) 0.56800(15) 0.0334(5) Uani 1 1 d . . . O1W O 0.48953(15) 0.03541(9) 0.61582(14) 0.0323(4) Uani 1 1 d . . . H1WA H 0.4439 0.0113 0.6434 0.039 Uiso 1 1 d R . . H1WB H 0.4764 0.0657 0.5704 0.039 Uiso 1 1 d R . . C1 C 0.8265(3) -0.04663(16) 0.5908(3) 0.0414(8) Uani 1 1 d . . . H1A H 0.7855 -0.0826 0.5706 0.050 Uiso 1 1 calc R . . N1 N 0.78523(18) 0.01397(12) 0.61252(18) 0.0330(5) Uani 1 1 d . . . N2 N 1.00557(19) 0.11829(12) 0.66126(19) 0.0369(6) Uani 1 1 d . . . H2B H 0.9752 0.1567 0.6548 0.044 Uiso 1 1 calc R . . O2 O 0.63981(17) 0.06803(10) 0.41424(17) 0.0422(5) Uani 1 1 d . . . C2 C 0.9280(2) -0.05689(16) 0.5978(3) 0.0426(8) Uani 1 1 d . . . H2A H 0.9544 -0.0997 0.5836 0.051 Uiso 1 1 calc R . . N3 N 0.6543(2) 0.2500 0.1401(3) 0.0305(8) Uani 1 2 d S . . O3 O 0.61807(15) -0.06864(10) 0.67225(17) 0.0384(5) Uani 1 1 d . . . C3 C 0.9905(3) -0.00495(17) 0.6252(2) 0.0401(7) Uani 1 1 d . . . H3A H 1.0590 -0.0120 0.6314 0.048 Uiso 1 1 calc R . . C4 C 0.9484(2) 0.05930(15) 0.6437(2) 0.0330(7) Uani 1 1 d . . . O4 O 0.59056(17) -0.12383(11) 0.52175(16) 0.0443(6) Uani 1 1 d . . . N4 N 0.6000(3) -0.2500 0.9530(3) 0.0318(8) Uani 1 2 d S . . C5 C 0.8457(2) 0.06564(15) 0.6379(2) 0.0330(7) Uani 1 1 d . . . H5A H 0.8172 0.1078 0.6522 0.040 Uiso 1 1 calc R . . O5 O 0.6556(3) 0.19682(13) 0.09474(19) 0.0784(10) Uani 1 1 d . . . O6 O 0.5993(2) -0.19514(12) 0.99811(17) 0.0510(6) Uani 1 1 d . . . C6 C 1.1039(2) 0.12075(16) 0.6874(2) 0.0338(7) Uani 1 1 d . . . O7 O 1.15179(16) 0.06969(11) 0.71158(16) 0.0426(5) Uani 1 1 d . . . C7 C 1.1535(2) 0.18870(16) 0.6810(2) 0.0342(7) Uani 1 1 d . . . O8 O 1.4083(2) 0.2500 0.6381(3) 0.0650(11) Uani 1 2 d S . . H8B H 1.4161 0.2812 0.5987 0.078 Uiso 0.50 1 d PR . . C8 C 1.2564(2) 0.18903(19) 0.6628(2) 0.0447(8) Uani 1 1 d . . . H8A H 1.2909 0.1481 0.6565 0.054 Uiso 1 1 calc R . . C9 C 1.3069(3) 0.2500 0.6543(3) 0.0488(13) Uani 1 2 d S . . C10 C 1.1020(3) 0.2500 0.6907(3) 0.0327(9) Uani 1 2 d S . . H10A H 1.0335 0.2500 0.7036 0.039 Uiso 1 2 calc SR . . C11 C 0.6446(2) 0.11990(14) 0.4690(2) 0.0294(6) Uani 1 1 d . . . C12 C 0.6493(2) 0.18824(13) 0.4155(2) 0.0255(6) Uani 1 1 d . . . C13 C 0.6513(2) 0.18863(14) 0.3070(2) 0.0270(6) Uani 1 1 d . . . H13A H 0.6517 0.1479 0.2699 0.032 Uiso 1 1 calc R . . C14 C 0.6528(3) 0.2500 0.2549(3) 0.0245(8) Uani 1 2 d S . . C15 C 0.5982(3) -0.2500 0.6251(3) 0.0277(8) Uani 1 2 d S . . H15A H 0.5949 -0.2500 0.5526 0.033 Uiso 1 2 calc SR . . C16 C 0.6485(3) 0.2500 0.4693(3) 0.0255(8) Uani 1 2 d S . . H16A H 0.6474 0.2500 0.5419 0.031 Uiso 1 2 calc SR . . C17 C 0.6021(2) -0.12156(15) 0.6181(2) 0.0325(6) Uani 1 1 d . . . C18 C 0.6006(2) -0.18806(13) 0.6784(2) 0.0251(6) Uani 1 1 d . . . C19 C 0.6027(2) -0.18809(13) 0.7865(2) 0.0254(6) Uani 1 1 d . . . H19A H 0.6048 -0.1474 0.8236 0.030 Uiso 1 1 calc R . . C20 C 0.6015(3) -0.2500 0.8380(3) 0.0240(8) Uani 1 2 d S . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Cu1 0.0361(2) 0.02064(18) 0.02925(18) 0.00437(14) 0.00185(15) 0.00428(14) O1 0.0433(12) 0.0255(11) 0.0313(10) 0.0072(8) 0.0009(9) 0.0022(9) O1W 0.0366(11) 0.0277(11) 0.0327(10) 0.0094(8) 0.0007(9) 0.0029(8) C1 0.0454(19) 0.0276(16) 0.0511(19) 0.0013(14) 0.0102(15) 0.0040(14) N1 0.0372(14) 0.0289(13) 0.0329(13) 0.0057(10) 0.0050(11) 0.0071(10) N2 0.0356(14) 0.0297(14) 0.0454(15) 0.0017(11) -0.0071(12) 0.0084(11) O2 0.0612(15) 0.0210(10) 0.0445(12) -0.0024(9) 0.0047(10) -0.0033(10) C2 0.0428(19) 0.0268(16) 0.058(2) 0.0023(14) 0.0087(15) 0.0112(14) N3 0.0332(19) 0.0313(19) 0.0270(17) 0.000 0.0033(14) 0.000 O3 0.0475(13) 0.0216(10) 0.0461(12) 0.0103(9) 0.0038(10) 0.0039(9) C3 0.0392(17) 0.0371(17) 0.0439(17) 0.0040(14) 0.0021(14) 0.0108(14) C4 0.0402(17) 0.0295(16) 0.0292(14) 0.0027(12) 0.0004(12) 0.0055(13) O4 0.0564(14) 0.0427(13) 0.0338(11) 0.0146(10) 0.0022(10) 0.0145(11) N4 0.0318(18) 0.037(2) 0.0265(17) 0.000 0.0018(14) 0.000 C5 0.0381(17) 0.0267(15) 0.0342(15) 0.0025(12) 0.0034(12) 0.0064(12) O5 0.163(3) 0.0382(15) 0.0341(13) -0.0088(11) 0.0080(16) -0.0126(17) O6 0.0788(17) 0.0425(14) 0.0319(11) -0.0122(10) 0.0057(12) 0.0031(12) C6 0.0354(16) 0.0423(18) 0.0238(13) -0.0002(12) -0.0012(12) 0.0097(14) O7 0.0448(13) 0.0437(13) 0.0392(12) 0.0031(10) -0.0036(10) 0.0176(11) C7 0.0319(16) 0.0466(19) 0.0240(13) 0.0020(13) -0.0019(12) 0.0074(13) O8 0.0239(16) 0.126(4) 0.046(2) 0.000 0.0032(15) 0.000 C8 0.0345(18) 0.071(2) 0.0283(15) 0.0020(16) 0.0004(13) 0.0146(17) C9 0.020(2) 0.098(4) 0.028(2) 0.000 0.0003(18) 0.000 C10 0.025(2) 0.044(3) 0.029(2) 0.000 -0.0013(17) 0.000 C11 0.0277(14) 0.0258(15) 0.0346(15) 0.0019(12) 0.0031(12) 0.0015(12) C12 0.0242(14) 0.0222(14) 0.0299(13) 0.0013(11) -0.0011(11) 0.0012(11) C13 0.0272(15) 0.0220(14) 0.0317(14) -0.0044(11) 0.0026(11) 0.0006(11) C14 0.0221(18) 0.028(2) 0.0237(18) 0.000 0.0025(15) 0.000 C15 0.0267(19) 0.033(2) 0.0234(18) 0.000 -0.0010(16) 0.000 C16 0.026(2) 0.0225(19) 0.0278(19) 0.000 0.0006(15) 0.000 C17 0.0303(14) 0.0279(15) 0.0394(16) 0.0111(13) 0.0059(13) 0.0102(12) C18 0.0221(13) 0.0235(14) 0.0298(13) 0.0046(11) 0.0010(11) 0.0031(11) C19 0.0255(14) 0.0207(13) 0.0299(13) -0.0003(11) 0.0016(11) 0.0030(11) C20 0.0243(19) 0.0242(19) 0.0236(18) 0.000 0.0023(15) 0.000 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O1W Cu1 O3 89.32(8) . . ? O1W Cu1 O1 87.77(8) . . ? O3 Cu1 O1 176.78(8) . . ? O1W Cu1 N1 176.76(9) . . ? O3 Cu1 N1 92.13(9) . . ? O1 Cu1 N1 90.86(9) . . ? O1W Cu1 O7 93.77(7) . 6_557 ? O3 Cu1 O7 92.18(8) . 6_557 ? O1 Cu1 O7 86.64(8) . 6_557 ? N1 Cu1 O7 89.07(9) . 6_557 ? C11 O1 Cu1 109.53(18) . . ? N1 C1 C2 121.5(3) . . ? C5 N1 C1 118.4(3) . . ? C5 N1 Cu1 120.88(19) . . ? C1 N1 Cu1 120.5(2) . . ? C6 N2 C4 126.5(3) . . ? C3 C2 C1 120.8(3) . . ? O5 N3 O5 121.8(4) . 8_565 ? O5 N3 C14 119.08(18) . . ? O5 N3 C14 119.08(18) 8_565 . ? C17 O3 Cu1 126.20(18) . . ? C2 C3 C4 118.1(3) . . ? C5 C4 N2 118.4(3) . . ? C5 C4 C3 118.1(3) . . ? N2 C4 C3 123.4(3) . . ? O6 N4 O6 123.6(3) . 8 ? O6 N4 C20 118.22(17) . . ? O6 N4 C20 118.22(17) 8 . ? N1 C5 C4 123.1(3) . . ? O7 C6 N2 122.5(3) . . ? O7 C6 C7 120.8(3) . . ? N2 C6 C7 116.6(3) . . ? C6 O7 Cu1 119.48(18) . 6_657 ? C8 C7 C10 119.9(3) . . ? C8 C7 C6 116.8(3) . . ? C10 C7 C6 123.3(3) . . ? C9 C8 C7 120.0(3) . . ? O8 C9 C8 119.8(2) . . ? O8 C9 C8 119.7(2) . 8_565 ? C8 C9 C8 120.5(4) . 8_565 ? C7 C10 C7 119.7(4) . 8_565 ? O2 C11 O1 124.1(3) . . ? O2 C11 C12 118.5(2) . . ? O1 C11 C12 117.4(2) . . ? C13 C12 C16 119.3(3) . . ? C13 C12 C11 117.4(2) . . ? C16 C12 C11 123.3(2) . . ? C14 C13 C12 119.3(3) . . ? C13 C14 C13 122.0(3) 8_565 . ? C13 C14 N3 118.98(17) 8_565 . ? C13 C14 N3 118.98(17) . . ? C18 C15 C18 121.3(3) . 8 ? C12 C16 C12 120.8(3) 8_565 . ? O4 C17 O3 126.4(3) . . ? O4 C17 C18 118.2(3) . . ? O3 C17 C18 115.4(2) . . ? C19 C18 C15 119.3(3) . . ? C19 C18 C17 120.6(2) . . ? C15 C18 C17 120.1(2) . . ? C18 C19 C20 118.5(3) . . ? C19 C20 C19 123.0(3) . 8 ? C19 C20 N4 118.50(17) . . ? C19 C20 N4 118.50(17) 8 . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Cu1 O1W 1.967(2) . ? Cu1 O3 1.969(2) . ? Cu1 O1 1.9769(19) . ? Cu1 N1 2.011(2) . ? Cu1 O7 2.360(2) 6_557 ? O1 C11 1.269(3) . ? C1 N1 1.341(4) . ? C1 C2 1.375(5) . ? N1 C5 1.337(4) . ? N2 C6 1.358(4) . ? N2 C4 1.406(4) . ? O2 C11 1.238(3) . ? C2 C3 1.364(5) . ? N3 O5 1.195(3) . ? N3 O5 1.195(3) 8_565 ? N3 C14 1.471(5) . ? O3 C17 1.268(4) . ? C3 C4 1.402(4) . ? C4 C5 1.380(4) . ? O4 C17 1.244(3) . ? N4 O6 1.223(2) . ? N4 O6 1.223(2) 8 ? N4 C20 1.473(5) . ? C6 O7 1.229(3) . ? C6 C7 1.492(4) . ? O7 Cu1 2.360(2) 6_657 ? C7 C8 1.396(4) . ? C7 C10 1.392(4) . ? O8 C9 1.371(5) . ? C8 C9 1.379(4) . ? C9 C8 1.379(4) 8_565 ? C10 C7 1.392(4) 8_565 ? C11 C12 1.508(4) . ? C12 C13 1.391(4) . ? C12 C16 1.395(3) . ? C13 C14 1.378(3) . ? C14 C13 1.378(3) 8_565 ? C15 C18 1.395(3) . ? C15 C18 1.395(3) 8 ? C16 C12 1.395(3) 8_565 ? C17 C18 1.518(4) . ? C18 C19 1.385(4) . ? C19 C20 1.383(3) . ? C20 C19 1.383(3) 8 ?